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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2007 2
2008 1
2010 1
2011 1
2012 1
2013 2
2014 5
2015 3
2016 1
2017 2
2018 6
2019 4
2021 4
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31 results
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Page 1
Computational pan-genomics: status, promises and challenges.
Computational Pan-Genomics Consortium. Computational Pan-Genomics Consortium. Brief Bioinform. 2018 Jan 1;19(1):118-135. doi: 10.1093/bib/bbw089. Brief Bioinform. 2018. PMID: 27769991 Free PMC article. Review.
Bit-parallel sequence-to-graph alignment.
Rautiainen M, Mäkinen V, Marschall T. Rautiainen M, et al. Among authors: makinen v. Bioinformatics. 2019 Oct 1;35(19):3599-3607. doi: 10.1093/bioinformatics/btz162. Bioinformatics. 2019. PMID: 30851095 Free PMC article.
Variant genotyping with gap filling.
Walve R, Salmela L, Mäkinen V. Walve R, et al. Among authors: makinen v. PLoS One. 2017 Sep 8;12(9):e0184608. doi: 10.1371/journal.pone.0184608. eCollection 2017. PLoS One. 2017. PMID: 28886164 Free PMC article.
Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics.
Rizzi R, Cairo M, Makinen V, Tomescu AI, Valenzuela D. Rizzi R, et al. Among authors: makinen v. IEEE/ACM Trans Comput Biol Bioinform. 2019 Jan-Feb;16(1):23-30. doi: 10.1109/TCBB.2018.2831691. Epub 2018 Apr 30. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 29994032
Bacterial genomic epidemiology with mixed samples.
Mäklin T, Kallonen T, Alanko J, Samuelsen Ø, Hegstad K, Mäkinen V, Corander J, Heinz E, Honkela A. Mäklin T, et al. Among authors: makinen v. Microb Genom. 2021 Nov;7(11). doi: 10.1099/mgen.0.000691. Microb Genom. 2021. PMID: 34779765 Free article.
A safe and complete algorithm for metagenomic assembly.
Obscura Acosta N, Mäkinen V, Tomescu AI. Obscura Acosta N, et al. Among authors: makinen v. Algorithms Mol Biol. 2018 Feb 7;13:3. doi: 10.1186/s13015-018-0122-7. eCollection 2018. Algorithms Mol Biol. 2018. PMID: 29445416 Free PMC article.
Towards pan-genome read alignment to improve variation calling.
Valenzuela D, Norri T, Välimäki N, Pitkänen E, Mäkinen V. Valenzuela D, et al. Among authors: makinen v. BMC Genomics. 2018 May 9;19(Suppl 2):87. doi: 10.1186/s12864-018-4465-8. BMC Genomics. 2018. PMID: 29764365 Free PMC article.
Gap Filling as Exact Path Length Problem.
Salmela L, Sahlin K, Mäkinen V, Tomescu AI. Salmela L, et al. Among authors: makinen v. J Comput Biol. 2016 May;23(5):347-61. doi: 10.1089/cmb.2015.0197. Epub 2016 Mar 9. J Comput Biol. 2016. PMID: 26959081
31 results