Yaron Orenstein - Search Results

Year	Number of Results
2012	1
2013	3
2014	2
2015	4
2016	4
2017	6
2018	4
2020	5
2021	5
2022	1

1

G4detector: Convolutional Neural Network to Predict DNA G-quadruplexes.

Barshai M, Aubert A, Orenstein Y. Barshai M, et al. Among authors: orenstein y. IEEE/ACM Trans Comput Biol Bioinform. 2021 Apr 19;PP. doi: 10.1109/TCBB.2021.3073595. Online ahead of print. IEEE/ACM Trans Comput Biol Bioinform. 2021. PMID: 33872156

2

Computational modeling of mRNA degradation dynamics using deep neural networks.

Yaish O, Orenstein Y. Yaish O, et al. Among authors: orenstein y. Bioinformatics. 2021 Nov 26:btab800. doi: 10.1093/bioinformatics/btab800. Online ahead of print. Bioinformatics. 2021. PMID: 34849591

3

Improved Analysis of High-Throughput Sequencing Data Using Small Universal k-Mer Hitting Sets.

Orenstein Y. Orenstein Y. Methods Mol Biol. 2021;2243:95-105. doi: 10.1007/978-1-0716-1103-6_5. Methods Mol Biol. 2021. PMID: 33606254

4

DeCoDe: degenerate codon design for complete protein-coding DNA libraries.

Shimko TC, Fordyce PM, Orenstein Y. Shimko TC, et al. Among authors: orenstein y. Bioinformatics. 2020 Jun 1;36(11):3357-3364. doi: 10.1093/bioinformatics/btaa162. Bioinformatics. 2020. PMID: 32176271 Free PMC article.

5

Overcoming the design, build, test bottleneck for synthesis of nonrepetitive protein-RNA cassettes.

Katz N, Tripto E, Granik N, Goldberg S, Atar O, Yakhini Z, Orenstein Y, Amit R. Katz N, et al. Among authors: orenstein y. Nat Commun. 2021 Mar 11;12(1):1576. doi: 10.1038/s41467-021-21578-6. Nat Commun. 2021. PMID: 33707432 Free PMC article.

6

Finding RNA structure in the unstructured RBPome.

Orenstein Y, Ohler U, Berger B. Orenstein Y, et al. BMC Genomics. 2018 Feb 20;19(1):154. doi: 10.1186/s12864-018-4540-1. BMC Genomics. 2018. PMID: 29463232 Free PMC article.

7

DeepSELEX: inferring DNA-binding preferences from HT-SELEX data using multi-class CNNs.

Asif M, Orenstein Y. Asif M, et al. Among authors: orenstein y. Bioinformatics. 2020 Dec 30;36(Suppl_2):i634-i642. doi: 10.1093/bioinformatics/btaa789. Bioinformatics. 2020. PMID: 33381817

8

Joker de Bruijn: Covering k-Mers Using Joker Characters.

Orenstein Y, Yu YW, Berger B. Orenstein Y, et al. J Comput Biol. 2018 Nov;25(11):1171-1178. doi: 10.1089/cmb.2018.0032. Epub 2018 Aug 17. J Comput Biol. 2018. PMID: 30117747 Free PMC article.

9

Quantitative Analysis of Differential Expression of HOX Genes in Multiple Cancers.

Adato O, Orenstein Y, Kopolovic J, Juven-Gershon T, Unger R. Adato O, et al. Among authors: orenstein y. Cancers (Basel). 2020 Jun 14;12(6):1572. doi: 10.3390/cancers12061572. Cancers (Basel). 2020. PMID: 32545894 Free PMC article.

10

A comparative analysis of RNA-binding proteins binding models learned from RNAcompete, RNA Bind-n-Seq and eCLIP data.

Tripto E, Orenstein Y. Tripto E, et al. Among authors: orenstein y. Brief Bioinform. 2021 Nov 5;22(6):bbab149. doi: 10.1093/bib/bbab149. Brief Bioinform. 2021. PMID: 34017982

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