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Page 1
Ultrastructural Details of Mammalian Chromosome Architecture.
Krietenstein N, Abraham S, Venev SV, Abdennur N, Gibcus J, Hsieh TS, Parsi KM, Yang L, Maehr R, Mirny LA, Dekker J, Rando OJ. Krietenstein N, et al. Among authors: abdennur n. Mol Cell. 2020 May 7;78(3):554-565.e7. doi: 10.1016/j.molcel.2020.03.003. Epub 2020 Mar 25. Mol Cell. 2020. PMID: 32213324 Free PMC article.
FTO Obesity Variant Circuitry and Adipocyte Browning in Humans.
Claussnitzer M, Dankel SN, Kim KH, Quon G, Meuleman W, Haugen C, Glunk V, Sousa IS, Beaudry JL, Puviindran V, Abdennur NA, Liu J, Svensson PA, Hsu YH, Drucker DJ, Mellgren G, Hui CC, Hauner H, Kellis M. Claussnitzer M, et al. Among authors: abdennur na. N Engl J Med. 2015 Sep 3;373(10):895-907. doi: 10.1056/NEJMoa1502214. Epub 2015 Aug 19. N Engl J Med. 2015. PMID: 26287746 Free PMC article.
A non-coding variant linked to metabolic obesity with normal weight affects actin remodelling in subcutaneous adipocytes.
Glunk V, Laber S, Sinnott-Armstrong N, Sobreira DR, Strobel SM, Batista TM, Kubitz P, Moud BN, Ebert H, Huang Y, Brandl B, Garbo G, Honecker J, Stirling DR, Abdennur N, Calabuig-Navarro V, Skurk T, Ocvirk S, Stemmer K, Cimini BA, Carpenter AE, Dankel SN, Lindgren CM, Hauner H, Nobrega MA, Claussnitzer M. Glunk V, et al. Among authors: abdennur n. Nat Metab. 2023 May;5(5):861-879. doi: 10.1038/s42255-023-00807-w. Epub 2023 May 30. Nat Metab. 2023. PMID: 37253881
Two major mechanisms of chromosome organization.
Mirny LA, Imakaev M, Abdennur N. Mirny LA, et al. Among authors: abdennur n. Curr Opin Cell Biol. 2019 Jun;58:142-152. doi: 10.1016/j.ceb.2019.05.001. Epub 2019 Jun 20. Curr Opin Cell Biol. 2019. PMID: 31228682 Free PMC article. Review.
Tunable DNMT1 degradation reveals DNMT1/DNMT3B synergy in DNA methylation and genome organization.
Scelfo A, Barra V, Abdennur N, Spracklin G, Busato F, Salinas-Luypaert C, Bonaiti E, Velasco G, Bonhomme F, Chipont A, Tijhuis AE, Spierings DCJ, Guérin C, Arimondo P, Francastel C, Foijer F, Tost J, Mirny L, Fachinetti D. Scelfo A, et al. Among authors: abdennur n. J Cell Biol. 2024 Apr 1;223(4):e202307026. doi: 10.1083/jcb.202307026. Epub 2024 Feb 20. J Cell Biol. 2024. PMID: 38376465
Pairtools: from sequencing data to chromosome contacts.
Open2C; Abdennur N, Fudenberg G, Flyamer IM, Galitsyna AA, Goloborodko A, Imakaev M, Venev SV. Open2C, et al. Among authors: abdennur n. bioRxiv [Preprint]. 2023 Feb 15:2023.02.13.528389. doi: 10.1101/2023.02.13.528389. bioRxiv. 2023. PMID: 36824968 Free PMC article. Preprint.
Cooltools: Enabling high-resolution Hi-C analysis in Python.
Open2C; Abdennur N, Abraham S, Fudenberg G, Flyamer IM, Galitsyna AA, Goloborodko A, Imakaev M, Oksuz BA, Venev SV, Xiao Y. Open2C, et al. Among authors: abdennur n. PLoS Comput Biol. 2024 May 6;20(5):e1012067. doi: 10.1371/journal.pcbi.1012067. eCollection 2024 May. PLoS Comput Biol. 2024. PMID: 38709825 Free PMC article.
Scool: a new data storage format for single-cell Hi-C data.
Wolff J, Abdennur N, Backofen R, Grüning B. Wolff J, et al. Among authors: abdennur n. Bioinformatics. 2021 Aug 4;37(14):2053-2054. doi: 10.1093/bioinformatics/btaa924. Bioinformatics. 2021. PMID: 33135074 Free PMC article.
26 results