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DandD: Efficient measurement of sequence growth and similarity.
Bonnie JK, Ahmed OY, Langmead B. Bonnie JK, et al. Among authors: ahmed oy. iScience. 2024 Feb 1;27(3):109054. doi: 10.1016/j.isci.2024.109054. eCollection 2024 Mar 15. iScience. 2024. PMID: 38361606 Free PMC article.
Movi: a fast and cache-efficient full-text pangenome index.
Zakeri M, Brown NK, Ahmed OY, Gagie T, Langmead B. Zakeri M, et al. Among authors: ahmed oy. bioRxiv [Preprint]. 2024 Feb 15:2023.11.04.565615. doi: 10.1101/2023.11.04.565615. bioRxiv. 2024. PMID: 37961660 Free PMC article. Preprint.