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A guide to creating design matrices for gene expression experiments.
Law CW, Zeglinski K, Dong X, Alhamdoosh M, Smyth GK, Ritchie ME. Law CW, et al. Among authors: alhamdoosh m. F1000Res. 2020 Dec 10;9:1444. doi: 10.12688/f1000research.27893.1. eCollection 2020. F1000Res. 2020. PMID: 33604029 Free PMC article.
Easy and efficient ensemble gene set testing with EGSEA.
Alhamdoosh M, Law CW, Tian L, Sheridan JM, Ng M, Ritchie ME. Alhamdoosh M, et al. F1000Res. 2017 Nov 14;6:2010. doi: 10.12688/f1000research.12544.1. eCollection 2017. F1000Res. 2017. PMID: 29333246 Free PMC article.
RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR.
Law CW, Alhamdoosh M, Su S, Dong X, Tian L, Smyth GK, Ritchie ME. Law CW, et al. Among authors: alhamdoosh m. F1000Res. 2016 Jun 17;5:ISCB Comm J-1408. doi: 10.12688/f1000research.9005.3. eCollection 2016. F1000Res. 2016. PMID: 27441086 Free PMC article.
Four simple recommendations to encourage best practices in research software.
Jiménez RC, Kuzak M, Alhamdoosh M, Barker M, Batut B, Borg M, Capella-Gutierrez S, Chue Hong N, Cook M, Corpas M, Flannery M, Garcia L, Gelpí JL, Gladman S, Goble C, González Ferreiro M, Gonzalez-Beltran A, Griffin PC, Grüning B, Hagberg J, Holub P, Hooft R, Ison J, Katz DS, Leskošek B, López Gómez F, Oliveira LJ, Mellor D, Mosbergen R, Mulder N, Perez-Riverol Y, Pergl R, Pichler H, Pope B, Sanz F, Schneider MV, Stodden V, Suchecki R, Svobodová Vařeková R, Talvik HA, Todorov I, Treloar A, Tyagi S, van Gompel M, Vaughan D, Via A, Wang X, Watson-Haigh NS, Crouch S. Jiménez RC, et al. Among authors: alhamdoosh m. F1000Res. 2017 Jun 13;6:ELIXIR-876. doi: 10.12688/f1000research.11407.1. eCollection 2017. F1000Res. 2017. PMID: 28751965 Free PMC article.
Topical application of human-derived Ig isotypes for the control of acute respiratory infection evaluated in a human CD89-expressing mouse model.
Koernig S, Campbell IK, Mackenzie-Kludas C, Schaub A, Loetscher M, Ching Ng W, Zehnder R, Pelczar P, Sanli I, Alhamdoosh M, Ng M, Brown LE, Käsermann F, Vonarburg C, Zuercher AW. Koernig S, et al. Among authors: alhamdoosh m. Mucosal Immunol. 2019 Jul;12(4):1013-1024. doi: 10.1038/s41385-019-0167-z. Epub 2019 May 19. Mucosal Immunol. 2019. PMID: 31105268 Free PMC article.
12 results