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Page 1
Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures.
Dong X, Du MRM, Gouil Q, Tian L, Jabbari JS, Bowden R, Baldoni PL, Chen Y, Smyth GK, Amarasinghe SL, Law CW, Ritchie ME. Dong X, et al. Among authors: amarasinghe sl. Nat Methods. 2023 Nov;20(11):1810-1821. doi: 10.1038/s41592-023-02026-3. Epub 2023 Oct 2. Nat Methods. 2023. PMID: 37783886
Stromal Niche Signals That Orchestrate Intestinal Regeneration.
Abud HE, Amarasinghe SL, Micati D, Jardé T. Abud HE, et al. Among authors: amarasinghe sl. Cell Mol Gastroenterol Hepatol. 2024;17(5):679-685. doi: 10.1016/j.jcmgh.2024.02.003. Epub 2024 Feb 9. Cell Mol Gastroenterol Hepatol. 2024. PMID: 38342301 Free PMC article. Review.
Advances in long-read single-cell transcriptomics.
Kumari P, Kaur M, Dindhoria K, Ashford B, Amarasinghe SL, Thind AS. Kumari P, et al. Among authors: amarasinghe sl. Hum Genet. 2024 Oct;143(9-10):1005-1020. doi: 10.1007/s00439-024-02678-x. Epub 2024 May 24. Hum Genet. 2024. PMID: 38787419 Free PMC article. Review.
Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing.
Tian L, Jabbari JS, Thijssen R, Gouil Q, Amarasinghe SL, Voogd O, Kariyawasam H, Du MRM, Schuster J, Wang C, Su S, Dong X, Law CW, Lucattini A, Prawer YDJ, Collar-Fernández C, Chung JD, Naim T, Chan A, Ly CH, Lynch GS, Ryall JG, Anttila CJA, Peng H, Anderson MA, Flensburg C, Majewski I, Roberts AW, Huang DCS, Clark MB, Ritchie ME. Tian L, et al. Among authors: amarasinghe sl. Genome Biol. 2021 Nov 11;22(1):310. doi: 10.1186/s13059-021-02525-6. Genome Biol. 2021. PMID: 34763716 Free PMC article.
A specialized tyrosine-based endocytosis signal in MR1 controls antigen presentation to MAIT cells.
Lim HJ, Wubben JM, Garcia CP, Cruz-Gomez S, Deng J, Mak JYW, Hachani A, Anderson RJ, Painter GF, Goyette J, Amarasinghe SL, Ritchie ME, Roquilly A, Fairlie DP, Gaus K, Rossjohn J, Villadangos JA, McWilliam HEG. Lim HJ, et al. Among authors: amarasinghe sl. J Cell Biol. 2022 Dec 5;221(12):e202110125. doi: 10.1083/jcb.202110125. Epub 2022 Sep 21. J Cell Biol. 2022. PMID: 36129434 Free PMC article.