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A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung.
Sountoulidis A, Marco Salas S, Braun E, Avenel C, Bergenstråhle J, Theelke J, Vicari M, Czarnewski P, Liontos A, Abalo X, Andrusivová Ž, Mirzazadeh R, Asp M, Li X, Hu L, Sariyar S, Martinez Casals A, Ayoglu B, Firsova A, Michaëlsson J, Lundberg E, Wählby C, Sundström E, Linnarsson S, Lundeberg J, Nilsson M, Samakovlis C. Sountoulidis A, et al. Among authors: avenel c. Nat Cell Biol. 2023 Feb;25(2):351-365. doi: 10.1038/s41556-022-01064-x. Epub 2023 Jan 16. Nat Cell Biol. 2023. PMID: 36646791 Free PMC article.
Profiling spatiotemporal gene expression of the developing human spinal cord and implications for ependymoma origin.
Li X, Andrusivova Z, Czarnewski P, Langseth CM, Andersson A, Liu Y, Gyllborg D, Braun E, Larsson L, Hu L, Alekseenko Z, Lee H, Avenel C, Kallner HK, Åkesson E, Adameyko I, Nilsson M, Linnarsson S, Lundeberg J, Sundström E. Li X, et al. Among authors: avenel c. Nat Neurosci. 2023 May;26(5):891-901. doi: 10.1038/s41593-023-01312-9. Epub 2023 Apr 24. Nat Neurosci. 2023. PMID: 37095395 Free PMC article.
Cellular architecture of evolving neuroinflammatory lesions and multiple sclerosis pathology.
Kukanja P, Langseth CM, Rubio Rodríguez-Kirby LA, Agirre E, Zheng C, Raman A, Yokota C, Avenel C, Tiklová K, Guerreiro-Cacais AO, Olsson T, Hilscher MM, Nilsson M, Castelo-Branco G. Kukanja P, et al. Among authors: avenel c. Cell. 2024 Apr 11;187(8):1990-2009.e19. doi: 10.1016/j.cell.2024.02.030. Epub 2024 Mar 20. Cell. 2024. PMID: 38513664 Free article.
DEPICTER: Deep representation clustering for histology annotation.
Chelebian E, Avenel C, Ciompi F, Wählby C. Chelebian E, et al. Among authors: avenel c. Comput Biol Med. 2024 Mar;170:108026. doi: 10.1016/j.compbiomed.2024.108026. Epub 2024 Jan 26. Comput Biol Med. 2024. PMID: 38308865 Free article.