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Year Number of Results
2013 1
2014 1
2017 3
2018 3
2019 2
2020 3
2021 3
2022 1
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17 results
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RNA-Seq Data Analysis in Galaxy.
Batut B, van den Beek M, Doyle MA, Soranzo N. Batut B, et al. Methods Mol Biol. 2021;2284:367-392. doi: 10.1007/978-1-0716-1307-8_20. Methods Mol Biol. 2021. PMID: 33835453
Gut microbiota drives age-related oxidative stress and mitochondrial damage in microglia via the metabolite N6-carboxymethyllysine.
Mossad O, Batut B, Yilmaz B, Dokalis N, Mezö C, Nent E, Nabavi LS, Mayer M, Maron FJM, Buescher JM, de Agüero MG, Szalay A, Lämmermann T, Macpherson AJ, Ganal-Vonarburg SC, Backofen R, Erny D, Prinz M, Blank T. Mossad O, et al. Among authors: batut b. Nat Neurosci. 2022 Mar;25(3):295-305. doi: 10.1038/s41593-022-01027-3. Epub 2022 Mar 3. Nat Neurosci. 2022. PMID: 35241804
Ten simple rules for making training materials FAIR.
Garcia L, Batut B, Burke ML, Kuzak M, Psomopoulos F, Arcila R, Attwood TK, Beard N, Carvalho-Silva D, Dimopoulos AC, Del Angel VD, Dumontier M, Gurwitz KT, Krause R, McQuilton P, Le Pera L, Morgan SL, Rauste P, Via A, Kahlem P, Rustici G, van Gelder CWG, Palagi PM. Garcia L, et al. Among authors: batut b. PLoS Comput Biol. 2020 May 21;16(5):e1007854. doi: 10.1371/journal.pcbi.1007854. eCollection 2020 May. PLoS Comput Biol. 2020. PMID: 32437350 Free PMC article.
Fostering accessible online education using Galaxy as an e-learning platform.
Serrano-Solano B, Föll MC, Gallardo-Alba C, Erxleben A, Rasche H, Hiltemann S, Fahrner M, Dunning MJ, Schulz MH, Scholtz B, Clements D, Nekrutenko A, Batut B, Grüning BA. Serrano-Solano B, et al. Among authors: batut b. PLoS Comput Biol. 2021 May 13;17(5):e1008923. doi: 10.1371/journal.pcbi.1008923. eCollection 2021 May. PLoS Comput Biol. 2021. PMID: 33983944 Free PMC article.
Community-Driven Data Analysis Training for Biology.
Batut B, Hiltemann S, Bagnacani A, Baker D, Bhardwaj V, Blank C, Bretaudeau A, Brillet-Guéguen L, Čech M, Chilton J, Clements D, Doppelt-Azeroual O, Erxleben A, Freeberg MA, Gladman S, Hoogstrate Y, Hotz HR, Houwaart T, Jagtap P, Larivière D, Le Corguillé G, Manke T, Mareuil F, Ramírez F, Ryan D, Sigloch FC, Soranzo N, Wolff J, Videm P, Wolfien M, Wubuli A, Yusuf D; Galaxy Training Network, Taylor J, Backofen R, Nekrutenko A, Grüning B. Batut B, et al. Cell Syst. 2018 Jun 27;6(6):752-758.e1. doi: 10.1016/j.cels.2018.05.012. Cell Syst. 2018. PMID: 29953864 Free PMC article.
ASaiM: a Galaxy-based framework to analyze microbiota data.
Batut B, Gravouil K, Defois C, Hiltemann S, Brugère JF, Peyretaillade E, Peyret P. Batut B, et al. Gigascience. 2018 Jun 1;7(6):giy057. doi: 10.1093/gigascience/giy057. Gigascience. 2018. PMID: 29790941 Free PMC article.
The RNA workbench 2.0: next generation RNA data analysis.
Fallmann J, Videm P, Bagnacani A, Batut B, Doyle MA, Klingstrom T, Eggenhofer F, Stadler PF, Backofen R, Grüning B. Fallmann J, et al. Among authors: batut b. Nucleic Acids Res. 2019 Jul 2;47(W1):W511-W515. doi: 10.1093/nar/gkz353. Nucleic Acids Res. 2019. PMID: 31073612 Free PMC article.
A single-cell RNA-sequencing training and analysis suite using the Galaxy framework.
Tekman M, Batut B, Ostrovsky A, Antoniewski C, Clements D, Ramirez F, Etherington GJ, Hotz HR, Scholtalbers J, Manning JR, Bellenger L, Doyle MA, Heydarian M, Huang N, Soranzo N, Moreno P, Mautner S, Papatheodorou I, Nekrutenko A, Taylor J, Blankenberg D, Backofen R, Grüning B. Tekman M, et al. Among authors: batut b. Gigascience. 2020 Oct 20;9(10):giaa102. doi: 10.1093/gigascience/giaa102. Gigascience. 2020. PMID: 33079170 Free PMC article.
17 results