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The oxDNA Coarse-Grained Model as a Tool to Simulate DNA Origami.
Doye JPK, Fowler H, Prešern D, Bohlin J, Rovigatti L, Romano F, Šulc P, Wong CK, Louis AA, Schreck JS, Engel MC, Matthies M, Benson E, Poppleton E, Snodin BEK. Doye JPK, et al. Among authors: snodin bek. Methods Mol Biol. 2023;2639:93-112. doi: 10.1007/978-1-0716-3028-0_6. Methods Mol Biol. 2023. PMID: 37166713
Coarse-graining DNA for simulations of DNA nanotechnology.
Doye JP, Ouldridge TE, Louis AA, Romano F, Šulc P, Matek C, Snodin BE, Rovigatti L, Schreck JS, Harrison RM, Smith WP. Doye JP, et al. Among authors: snodin be. Phys Chem Chem Phys. 2013 Dec 21;15(47):20395-414. doi: 10.1039/c3cp53545b. Epub 2013 Oct 11. Phys Chem Chem Phys. 2013. PMID: 24121860 Free article.
Direct Simulation of the Self-Assembly of a Small DNA Origami.
Snodin BE, Romano F, Rovigatti L, Ouldridge TE, Louis AA, Doye JP. Snodin BE, et al. ACS Nano. 2016 Feb 23;10(2):1724-37. doi: 10.1021/acsnano.5b05865. Epub 2016 Jan 22. ACS Nano. 2016. PMID: 26766072 Free article.