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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1990 1
1991 4
1992 1
1993 1
2004 1
2005 1
2008 1
2009 2
2010 2
2011 3
2012 7
2013 8
2014 7
2015 10
2016 11
2017 6
2018 5
2019 5
2020 5
2021 8
2022 3
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85 results
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Page 1
PDBsum additions.
de Beer TA, Berka K, Thornton JM, Laskowski RA. de Beer TA, et al. Among authors: berka k. Nucleic Acids Res. 2014 Jan;42(Database issue):D292-6. doi: 10.1093/nar/gkt940. Epub 2013 Oct 22. Nucleic Acids Res. 2014. PMID: 24153109 Free PMC article.
CATH: increased structural coverage of functional space.
Sillitoe I, Bordin N, Dawson N, Waman VP, Ashford P, Scholes HM, Pang CSM, Woodridge L, Rauer C, Sen N, Abbasian M, Le Cornu S, Lam SD, Berka K, Varekova IH, Svobodova R, Lees J, Orengo CA. Sillitoe I, et al. Among authors: berka k. Nucleic Acids Res. 2021 Jan 8;49(D1):D266-D273. doi: 10.1093/nar/gkaa1079. Nucleic Acids Res. 2021. PMID: 33237325 Free PMC article.
Uncovering of cytochrome P450 anatomy by SecStrAnnotator.
Midlik A, Navrátilová V, Moturu TR, Koča J, Svobodová R, Berka K. Midlik A, et al. Among authors: berka k. Sci Rep. 2021 Jun 11;11(1):12345. doi: 10.1038/s41598-021-91494-8. Sci Rep. 2021. PMID: 34117311 Free PMC article.
2DProts: Database of Family-Wide Protein Secondary Structure Diagrams.
Hutařová Vařeková I, Hutař J, Midlik A, Horský V, Hladká E, Svobodová R, Berka K. Hutařová Vařeková I, et al. Among authors: berka k. Bioinformatics. 2021 Jul 9;37(23):4599-601. doi: 10.1093/bioinformatics/btab505. Online ahead of print. Bioinformatics. 2021. PMID: 34244700 Free PMC article.
Ion Pathways in the Na+/K+-ATPase.
Čechová P, Berka K, Kubala M. Čechová P, et al. Among authors: berka k. J Chem Inf Model. 2016 Dec 27;56(12):2434-2444. doi: 10.1021/acs.jcim.6b00353. Epub 2016 Dec 14. J Chem Inf Model. 2016. PMID: 27966362
MolMeDB: Molecules on Membranes Database.
Juračka J, Šrejber M, Melíková M, Bazgier V, Berka K. Juračka J, et al. Among authors: berka k. Database (Oxford). 2019 Jan 1;2019:baz078. doi: 10.1093/database/baz078. Database (Oxford). 2019. PMID: 31250015 Free PMC article.
OverProt: secondary structure consensus for protein families.
Midlik A, Hutařová Vařeková I, Hutař J, Chareshneu A, Berka K, Svobodová R. Midlik A, et al. Among authors: berka k. Bioinformatics. 2022 Jul 11;38(14):3648-3650. doi: 10.1093/bioinformatics/btac384. Bioinformatics. 2022. PMID: 35674374
In silico pharmacology: Drug membrane partitioning and crossing.
Di Meo F, Fabre G, Berka K, Ossman T, Chantemargue B, Paloncýová M, Marquet P, Otyepka M, Trouillas P. Di Meo F, et al. Among authors: berka k. Pharmacol Res. 2016 Sep;111:471-486. doi: 10.1016/j.phrs.2016.06.030. Epub 2016 Jul 1. Pharmacol Res. 2016. PMID: 27378566 Review.
Automated Family-Wide Annotation of Secondary Structure Elements.
Midlik A, Hutařová Vařeková I, Hutař J, Moturu TR, Navrátilová V, Koča J, Berka K, Svobodová Vařeková R. Midlik A, et al. Among authors: berka k. Methods Mol Biol. 2019;1958:47-71. doi: 10.1007/978-1-4939-9161-7_3. Methods Mol Biol. 2019. PMID: 30945213
Anatomy of enzyme channels.
Pravda L, Berka K, Svobodová Vařeková R, Sehnal D, Banáš P, Laskowski RA, Koča J, Otyepka M. Pravda L, et al. Among authors: berka k. BMC Bioinformatics. 2014 Nov 18;15(1):379. doi: 10.1186/s12859-014-0379-x. BMC Bioinformatics. 2014. PMID: 25403510 Free PMC article.
85 results