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Year Number of Results
2016 1
2018 2
2019 2
2020 1
2021 3
2022 4
2023 1
2024 0

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13 results

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Page 1
Machine learning guided aptamer refinement and discovery.
Bashir A, Yang Q, Wang J, Hoyer S, Chou W, McLean C, Davis G, Gong Q, Armstrong Z, Jang J, Kang H, Pawlosky A, Scott A, Dahl GE, Berndl M, Dimon M, Ferguson BS. Bashir A, et al. Among authors: berndl m. Nat Commun. 2021 Apr 22;12(1):2366. doi: 10.1038/s41467-021-22555-9. Nat Commun. 2021. PMID: 33888692 Free PMC article.
Discovery of complex oxides via automated experiments and data science.
Yang L, Haber JA, Armstrong Z, Yang SJ, Kan K, Zhou L, Richter MH, Roat C, Wagner N, Coram M, Berndl M, Riley P, Gregoire JM. Yang L, et al. Among authors: berndl m. Proc Natl Acad Sci U S A. 2021 Sep 14;118(37):e2106042118. doi: 10.1073/pnas.2106042118. Proc Natl Acad Sci U S A. 2021. PMID: 34508002 Free PMC article.
Molecular graph convolutions: moving beyond fingerprints.
Kearnes S, McCloskey K, Berndl M, Pande V, Riley P. Kearnes S, et al. Among authors: berndl m. J Comput Aided Mol Des. 2016 Aug;30(8):595-608. doi: 10.1007/s10822-016-9938-8. Epub 2016 Aug 24. J Comput Aided Mol Des. 2016. PMID: 27558503 Free PMC article.
ProtSeq: Toward high-throughput, single-molecule protein sequencing via amino acid conversion into DNA barcodes.
Hong JM, Gibbons M, Bashir A, Wu D, Shao S, Cutts Z, Chavarha M, Chen Y, Schiff L, Foster M, Church VA, Ching L, Ahadi S, Hieu-Thao Le A, Tran A, Dimon M, Coram M, Williams B, Jess P, Berndl M, Pawlosky A. Hong JM, et al. Among authors: berndl m. iScience. 2021 Dec 11;25(1):103586. doi: 10.1016/j.isci.2021.103586. eCollection 2022 Jan 21. iScience. 2021. PMID: 35005536 Free PMC article.
In Silico Labeling: Predicting Fluorescent Labels in Unlabeled Images.
Christiansen EM, Yang SJ, Ando DM, Javaherian A, Skibinski G, Lipnick S, Mount E, O'Neil A, Shah K, Lee AK, Goyal P, Fedus W, Poplin R, Esteva A, Berndl M, Rubin LL, Nelson P, Finkbeiner S. Christiansen EM, et al. Among authors: berndl m. Cell. 2018 Apr 19;173(3):792-803.e19. doi: 10.1016/j.cell.2018.03.040. Epub 2018 Apr 12. Cell. 2018. PMID: 29656897 Free PMC article.
Assessing microscope image focus quality with deep learning.
Yang SJ, Berndl M, Michael Ando D, Barch M, Narayanaswamy A, Christiansen E, Hoyer S, Roat C, Hung J, Rueden CT, Shankar A, Finkbeiner S, Nelson P. Yang SJ, et al. Among authors: berndl m. BMC Bioinformatics. 2018 Mar 15;19(1):77. doi: 10.1186/s12859-018-2087-4. BMC Bioinformatics. 2018. PMID: 29540156 Free PMC article.
Integrating deep learning and unbiased automated high-content screening to identify complex disease signatures in human fibroblasts.
Schiff L, Migliori B, Chen Y, Carter D, Bonilla C, Hall J, Fan M, Tam E, Ahadi S, Fischbacher B, Geraschenko A, Hunter CJ, Venugopalan S, DesMarteau S, Narayanaswamy A, Jacob S, Armstrong Z, Ferrarotto P, Williams B, Buckley-Herd G, Hazard J, Goldberg J, Coram M, Otto R, Baltz EA, Andres-Martin L, Pritchard O, Duren-Lubanski A, Daigavane A, Reggio K; NYSCF Global Stem Cell Array® Team; Nelson PC, Frumkin M, Solomon SL, Bauer L, Aiyar RS, Schwarzbach E, Noggle SA, Monsma FJ Jr, Paull D, Berndl M, Yang SJ, Johannesson B. Schiff L, et al. Among authors: berndl m. Nat Commun. 2022 Mar 25;13(1):1590. doi: 10.1038/s41467-022-28423-4. Nat Commun. 2022. PMID: 35338121 Free PMC article.
Applying Deep Neural Network Analysis to High-Content Image-Based Assays.
Yang SJ, Lipnick SL, Makhortova NR, Venugopalan S, Fan M, Armstrong Z, Schlaeger TM, Deng L, Chung WK, O'Callaghan L, Geraschenko A, Whye D, Berndl M, Hazard J, Williams B, Narayanaswamy A, Ando DM, Nelson P, Rubin LL. Yang SJ, et al. Among authors: berndl m. SLAS Discov. 2019 Sep;24(8):829-841. doi: 10.1177/2472555219857715. Epub 2019 Jul 8. SLAS Discov. 2019. PMID: 31284814 Free PMC article.
13 results