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Parallel evolution of HIV-1 in a long-term experiment.

Bertels F, Leemann C, Metzner KJ, Regoes R. Bertels F, et al. Mol Biol Evol. 2019 Jun 28;36(11):2400-14. doi: 10.1093/molbev/msz155. Online ahead of print. Mol Biol Evol. 2019. PMID: 31251344 Free PMC article.

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Repeated Phenotypic Evolution by Different Genetic Routes in Pseudomonas fluorescens SBW25.

Gallie J, Bertels F, Remigi P, Ferguson GC, Nestmann S, Rainey PB. Gallie J, et al. Among authors: bertels f. Mol Biol Evol. 2019 May 1;36(5):1071-1085. doi: 10.1093/molbev/msz040. Mol Biol Evol. 2019. PMID: 30835268 Free PMC article.

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Discovering Complete Quasispecies in Bacterial Genomes.

Bertels F, Gokhale CS, Traulsen A. Bertels F, et al. Genetics. 2017 Aug;206(4):2149-2157. doi: 10.1534/genetics.117.201160. Epub 2017 Jun 19. Genetics. 2017. PMID: 28630115 Free PMC article.

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Identification and Characterization of Domesticated Bacterial Transposases.

Bertels F, Gallie J, Rainey PB. Bertels F, et al. Genome Biol Evol. 2017 Aug 1;9(8):2110-2121. doi: 10.1093/gbe/evx146. Genome Biol Evol. 2017. PMID: 28910967 Free PMC article.

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Estimating the mutational fitness effects distribution during early HIV infection.

Bons E, Bertels F, Regoes RR. Bons E, et al. Among authors: bertels f. Virus Evol. 2018 Oct 4;4(2):vey029. doi: 10.1093/ve/vey029. eCollection 2018 Jul. Virus Evol. 2018. PMID: 30310682 Free PMC article.

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Metabolic cross-feeding via intercellular nanotubes among bacteria.

Pande S, Shitut S, Freund L, Westermann M, Bertels F, Colesie C, Bischofs IB, Kost C. Pande S, et al. Among authors: bertels f. Nat Commun. 2015 Feb 23;6:6238. doi: 10.1038/ncomms7238. Nat Commun. 2015. PMID: 25703793 Free article.

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Dissecting HIV Virulence: Heritability of Setpoint Viral Load, CD4+ T-Cell Decline, and Per-Parasite Pathogenicity.

Bertels F, Marzel A, Leventhal G, Mitov V, Fellay J, Günthard HF, Böni J, Yerly S, Klimkait T, Aubert V, Battegay M, Rauch A, Cavassini M, Calmy A, Bernasconi E, Schmid P, Scherrer AU, Müller V, Bonhoeffer S, Kouyos R, Regoes RR; Swiss HIV Cohort Study. Bertels F, et al. Mol Biol Evol. 2018 Jan 1;35(1):27-37. doi: 10.1093/molbev/msx246. Mol Biol Evol. 2018. PMID: 29029206 Free PMC article.

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Curiosities of REPINs and RAYTs.

Bertels F, Rainey PB. Bertels F, et al. Mob Genet Elements. 2011 Nov 1;1(4):262-268. doi: 10.4161/mge.18610. Mob Genet Elements. 2011. PMID: 22545236 Free PMC article.

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Automated reconstruction of whole-genome phylogenies from short-sequence reads.

Bertels F, Silander OK, Pachkov M, Rainey PB, van Nimwegen E. Bertels F, et al. Mol Biol Evol. 2014 May;31(5):1077-88. doi: 10.1093/molbev/msu088. Epub 2014 Mar 5. Mol Biol Evol. 2014. PMID: 24600054 Free PMC article.

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Recombination of Virulence Genes in Divergent Acidovorax avenae Strains That Infect a Common Host.

Zeng Q, Wang J, Bertels F, Giordano PR, Chilvers MI, Huntley RB, Vargas JM, Sundin GW, Jacobs JL, Yang CH. Zeng Q, et al. Among authors: bertels f. Mol Plant Microbe Interact. 2017 Oct;30(10):813-828. doi: 10.1094/MPMI-06-17-0151-R. Epub 2017 Aug 28. Mol Plant Microbe Interact. 2017. PMID: 28682158

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