Bilmes J[au] - Search Results

Year	Number of Results
2008	3
2010	2
2011	1
2012	3
2013	1
2014	1
2015	1
2016	3
2017	1
2018	6
2019	3
2020	3
2021	3
2022	2
2023	1

1

Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification.

Klammer AA, Reynolds SM, Bilmes JA, MacCoss MJ, Noble WS. Klammer AA, et al. Among authors: bilmes ja. Bioinformatics. 2008 Jul 1;24(13):i348-56. doi: 10.1093/bioinformatics/btn189. Bioinformatics. 2008. PMID: 18586734 Free PMC article.

2

Faster and more accurate graphical model identification of tandem mass spectra using trellises.

Wang S, Halloran JT, Bilmes JA, Noble WS. Wang S, et al. Among authors: bilmes ja. Bioinformatics. 2016 Jun 15;32(12):i322-i331. doi: 10.1093/bioinformatics/btw269. Bioinformatics. 2016. PMID: 27307634 Free PMC article.

3

A learned embedding for efficient joint analysis of millions of mass spectra.

Bittremieux W, May DH, Bilmes J, Noble WS. Bittremieux W, et al. Among authors: bilmes j. Nat Methods. 2022 Jun;19(6):675-678. doi: 10.1038/s41592-022-01496-1. Epub 2022 May 30. Nat Methods. 2022. PMID: 35637305 Free PMC article.

4

Linking cells across single-cell modalities by synergistic matching of neighborhood structure.

Hristov BH, Bilmes JA, Noble WS. Hristov BH, et al. Among authors: bilmes ja. Bioinformatics. 2022 Sep 16;38(Suppl_2):ii148-ii154. doi: 10.1093/bioinformatics/btac481. Bioinformatics. 2022. PMID: 36124797

5

DIAmeter: matching peptides to data-independent acquisition mass spectrometry data.

Lu YY, Bilmes J, Rodriguez-Mias RA, Villén J, Noble WS. Lu YY, et al. Among authors: bilmes j. Bioinformatics. 2021 Jul 12;37(Suppl_1):i434-i442. doi: 10.1093/bioinformatics/btab284. Bioinformatics. 2021. PMID: 34252924 Free PMC article.

6

MS1Connect: a mass spectrometry run similarity measure.

Lin A, Deatherage Kaiser BL, Hutchison JR, Bilmes JA, Noble WS. Lin A, et al. Among authors: bilmes ja. Bioinformatics. 2023 Feb 3;39(2):btad058. doi: 10.1093/bioinformatics/btad058. Bioinformatics. 2023. PMID: 36702456 Free PMC article.

7

Segway 2.0: Gaussian mixture models and minibatch training.

Chan RCW, Libbrecht MW, Roberts EG, Bilmes JA, Noble WS, Hoffman MM. Chan RCW, et al. Among authors: bilmes ja. Bioinformatics. 2018 Feb 15;34(4):669-671. doi: 10.1093/bioinformatics/btx603. Bioinformatics. 2018. PMID: 29028889 Free PMC article.

8

PREDICTD PaRallel Epigenomics Data Imputation with Cloud-based Tensor Decomposition.

Durham TJ, Libbrecht MW, Howbert JJ, Bilmes J, Noble WS. Durham TJ, et al. Among authors: bilmes j. Nat Commun. 2018 Apr 11;9(1):1402. doi: 10.1038/s41467-018-03635-9. Nat Commun. 2018. PMID: 29643364 Free PMC article.

9

Submodular Generalized Matching for Peptide Identification in Tandem Mass Spectrometry.

Bai W, Bilmes J, Noble WS. Bai W, et al. Among authors: bilmes j. IEEE/ACM Trans Comput Biol Bioinform. 2019 Jul-Aug;16(4):1168-1181. doi: 10.1109/TCBB.2018.2822280. Epub 2018 Apr 2. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 29993658 Free PMC article.

10

Prioritizing transcriptomic and epigenomic experiments using an optimization strategy that leverages imputed data.

Schreiber J, Bilmes J, Noble WS. Schreiber J, et al. Among authors: bilmes j. Bioinformatics. 2021 May 1;37(4):439-447. doi: 10.1093/bioinformatics/btaa830. Bioinformatics. 2021. PMID: 32966546 Free PMC article.

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