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2005 1
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12 results

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Leveraging the national cyberinfrastructure for biomedical research.
LeDuc R, Vaughn M, Fonner JM, Sullivan M, Williams JG, Blood PD, Taylor J, Barnett W. LeDuc R, et al. Among authors: blood pd. J Am Med Inform Assoc. 2014 Mar-Apr;21(2):195-9. doi: 10.1136/amiajnl-2013-002059. Epub 2013 Aug 20. J Am Med Inform Assoc. 2014. PMID: 23964072 Free PMC article.
Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC. Sczyrba A, et al. Among authors: blood pd. Nat Methods. 2017 Nov;14(11):1063-1071. doi: 10.1038/nmeth.4458. Epub 2017 Oct 2. Nat Methods. 2017. PMID: 28967888 Free PMC article.
Enabling large-scale next-generation sequence assembly with Blacklight.
Couger MB, Pipes L, Squina F, Prade R, Siepel A, Palermo R, Katze MG, Mason CE, Blood PD. Couger MB, et al. Among authors: blood pd. Concurr Comput. 2014 Sep 10;26(13):2157-2166. doi: 10.1002/cpe.3231. Concurr Comput. 2014. PMID: 25294974 Free PMC article.
Raw pacific biosciences and illumina sequencing reads and assembled genome data for the cattle ticks Rhipicephalus microplus and Rhipicephalus annulatus.
Guerrero FD, Ghaffari N, Bendele KG, Metz RP, Dickens CM, Blood PD, Tidwell J, Miller RJ, de León AAP, Teel PD, Johnson CD. Guerrero FD, et al. Among authors: blood pd. Data Brief. 2021 Feb 6;35:106852. doi: 10.1016/j.dib.2021.106852. eCollection 2021 Apr. Data Brief. 2021. PMID: 33644273 Free PMC article.
TCGA Expedition: A Data Acquisition and Management System for TCGA Data.
Chandran UR, Medvedeva OP, Barmada MM, Blood PD, Chakka A, Luthra S, Ferreira A, Wong KF, Lee AV, Zhang Z, Budden R, Scott JR, Berndt A, Berg JM, Jacobson RS. Chandran UR, et al. Among authors: blood pd. PLoS One. 2016 Oct 27;11(10):e0165395. doi: 10.1371/journal.pone.0165395. eCollection 2016. PLoS One. 2016. PMID: 27788220 Free PMC article.
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.
Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, MacManes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey CN, Henschel R, LeDuc RD, Friedman N, Regev A. Haas BJ, et al. Among authors: blood pd. Nat Protoc. 2013 Aug;8(8):1494-512. doi: 10.1038/nprot.2013.084. Epub 2013 Jul 11. Nat Protoc. 2013. PMID: 23845962 Free PMC article.
The Pacific Biosciences de novo assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Haemaphysalis longicornis Neumann, 1901.
Guerrero FD, Bendele KG, Ghaffari N, Guhlin J, Gedye KR, Lawrence KE, Dearden PK, Harrop TWR, Heath ACG, Lun Y, Metz RP, Teel P, Perez de Leon A, Biggs PJ, Pomroy WE, Johnson CD, Blood PD, Bellgard SE, Tompkins DM. Guerrero FD, et al. Among authors: blood pd. Data Brief. 2019 Oct 4;27:104602. doi: 10.1016/j.dib.2019.104602. eCollection 2019 Dec. Data Brief. 2019. PMID: 31656838 Free PMC article.
Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture.
Ghaffari N, Sanchez-Flores A, Doan R, Garcia-Orozco KD, Chen PL, Ochoa-Leyva A, Lopez-Zavala AA, Carrasco JS, Hong C, Brieba LG, Rudiño-Piñera E, Blood PD, Sawyer JE, Johnson CD, Dindot SV, Sotelo-Mundo RR, Criscitiello MF. Ghaffari N, et al. Among authors: blood pd. Sci Rep. 2014 Nov 25;4:7081. doi: 10.1038/srep07081. Sci Rep. 2014. PMID: 25420880 Free PMC article.
12 results