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2019 1
2020 1
2021 6
2023 6
2024 2

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15 results

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Page 1
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex.
Yao Z, Liu H, Xie F, Fischer S, Adkins RS, Aldridge AI, Ament SA, Bartlett A, Behrens MM, Van den Berge K, Bertagnolli D, de Bézieux HR, Biancalani T, Booeshaghi AS, Bravo HC, Casper T, Colantuoni C, Crabtree J, Creasy H, Crichton K, Crow M, Dee N, Dougherty EL, Doyle WI, Dudoit S, Fang R, Felix V, Fong O, Giglio M, Goldy J, Hawrylycz M, Herb BR, Hertzano R, Hou X, Hu Q, Kancherla J, Kroll M, Lathia K, Li YE, Lucero JD, Luo C, Mahurkar A, McMillen D, Nadaf NM, Nery JR, Nguyen TN, Niu SY, Ntranos V, Orvis J, Osteen JK, Pham T, Pinto-Duarte A, Poirion O, Preissl S, Purdom E, Rimorin C, Risso D, Rivkin AC, Smith K, Street K, Sulc J, Svensson V, Tieu M, Torkelson A, Tung H, Vaishnav ED, Vanderburg CR, van Velthoven C, Wang X, White OR, Huang ZJ, Kharchenko PV, Pachter L, Ngai J, Regev A, Tasic B, Welch JD, Gillis J, Macosko EZ, Ren B, Ecker JR, Zeng H, Mukamel EA. Yao Z, et al. Among authors: booeshaghi as. Nature. 2021 Oct;598(7879):103-110. doi: 10.1038/s41586-021-03500-8. Epub 2021 Oct 6. Nature. 2021. PMID: 34616066 Free PMC article.
Isoform cell-type specificity in the mouse primary motor cortex.
Booeshaghi AS, Yao Z, van Velthoven C, Smith K, Tasic B, Zeng H, Pachter L. Booeshaghi AS, et al. Nature. 2021 Oct;598(7879):195-199. doi: 10.1038/s41586-021-03969-3. Epub 2021 Oct 6. Nature. 2021. PMID: 34616073 Free PMC article.
Universal preprocessing of single-cell genomics data.
Booeshaghi AS, Sullivan DK, Pachter L. Booeshaghi AS, et al. bioRxiv [Preprint]. 2023 Sep 15:2023.09.14.543267. doi: 10.1101/2023.09.14.543267. bioRxiv. 2023. PMID: 37745572 Free PMC article. Preprint.
A machine-readable specification for genomics assays.
Booeshaghi AS, Chen X, Pachter L. Booeshaghi AS, et al. bioRxiv [Preprint]. 2023 Jul 18:2023.03.17.533215. doi: 10.1101/2023.03.17.533215. bioRxiv. 2023. PMID: 36993635 Free PMC article. Preprint.
Modular, efficient and constant-memory single-cell RNA-seq preprocessing.
Melsted P, Booeshaghi AS, Liu L, Gao F, Lu L, Min KHJ, da Veiga Beltrame E, Hjörleifsson KE, Gehring J, Pachter L. Melsted P, et al. Among authors: booeshaghi as. Nat Biotechnol. 2021 Jul;39(7):813-818. doi: 10.1038/s41587-021-00870-2. Epub 2021 Apr 1. Nat Biotechnol. 2021. PMID: 33795888
Metadata retrieval from sequence databases with ffq.
Gálvez-Merchán Á, Min KHJ, Pachter L, Booeshaghi AS. Gálvez-Merchán Á, et al. Among authors: booeshaghi as. Bioinformatics. 2023 Jan 1;39(1):btac667. doi: 10.1093/bioinformatics/btac667. Bioinformatics. 2023. PMID: 36610997 Free PMC article.
Quantifying orthogonal barcodes for sequence census assays.
Booeshaghi AS, Min KHJ, Gehring J, Pachter L. Booeshaghi AS, et al. Bioinform Adv. 2023 Dec 20;4(1):vbad181. doi: 10.1093/bioadv/vbad181. eCollection 2024. Bioinform Adv. 2023. PMID: 38213823 Free PMC article.
Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing.
Bloom JS, Sathe L, Munugala C, Jones EM, Gasperini M, Lubock NB, Yarza F, Thompson EM, Kovary KM, Park J, Marquette D, Kay S, Lucas M, Love T, Booeshaghi AS, Brandenberg OF, Guo L, Boocock J, Hochman M, Simpkins SW, Lin I, LaPierre N, Hong D, Zhang Y, Oland G, Choe BJ, Chandrasekaran S, Hilt EE, Butte MJ, Damoiseaux R, Kravit C, Cooper AR, Yin Y, Pachter L, Garner OB, Flint J, Eskin E, Luo C, Kosuri S, Kruglyak L, Arboleda VA. Bloom JS, et al. Among authors: booeshaghi as. medRxiv [Preprint]. 2021 Mar 9:2020.08.04.20167874. doi: 10.1101/2020.08.04.20167874. medRxiv. 2021. PMID: 32909008 Free PMC article. Updated. Preprint.
15 results