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Protein function prediction via graph kernels.

Borgwardt KM, Ong CS, Schönauer S, Vishwanathan SV, Smola AJ, Kriegel HP. Borgwardt KM, et al. Bioinformatics. 2005 Jun;21 Suppl 1:i47-56. doi: 10.1093/bioinformatics/bti1007. Bioinformatics. 2005. PMID: 15961493

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Methods and Tools in Genome-wide Association Studies.

Gumpinger AC, Roqueiro D, Grimm DG, Borgwardt KM. Gumpinger AC, et al. Among authors: borgwardt km. Methods Mol Biol. 2018;1819:93-136. doi: 10.1007/978-1-4939-8618-7_5. Methods Mol Biol. 2018. PMID: 30421401

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Accurate and adaptive imputation of summary statistics in mixed-ethnicity cohorts.

Togninalli M, Roqueiro D; COPDGene Investigators, Borgwardt KM. Togninalli M, et al. Among authors: borgwardt km. Bioinformatics. 2018 Sep 1;34(17):i687-i696. doi: 10.1093/bioinformatics/bty596. Bioinformatics. 2018. PMID: 30423082 Free PMC article.

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Genetic architecture of nonadditive inheritance in Arabidopsis thaliana hybrids.

Seymour DK, Chae E, Grimm DG, Martín Pizarro C, Habring-Müller A, Vasseur F, Rakitsch B, Borgwardt KM, Koenig D, Weigel D. Seymour DK, et al. Among authors: borgwardt km. Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):E7317-E7326. doi: 10.1073/pnas.1615268113. Epub 2016 Nov 1. Proc Natl Acad Sci U S A. 2016. PMID: 27803326 Free PMC article.

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GLIDE: GPU-based linear regression for detection of epistasis.

Kam-Thong T, Azencott CA, Cayton L, Pütz B, Altmann A, Karbalai N, Sämann PG, Schölkopf B, Müller-Myhsok B, Borgwardt KM. Kam-Thong T, et al. Among authors: borgwardt km. Hum Hered. 2012;73(4):220-36. doi: 10.1159/000341885. Epub 2012 Sep 4. Hum Hered. 2012. PMID: 22965145 Free article.

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Efficient network-guided multi-locus association mapping with graph cuts.

Azencott CA, Grimm D, Sugiyama M, Kawahara Y, Borgwardt KM. Azencott CA, et al. Among authors: borgwardt km. Bioinformatics. 2013 Jul 1;29(13):i171-9. doi: 10.1093/bioinformatics/btt238. Bioinformatics. 2013. PMID: 23812981 Free PMC article.

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easyGWAS: A Cloud-Based Platform for Comparing the Results of Genome-Wide Association Studies.

Grimm DG, Roqueiro D, Salomé PA, Kleeberger S, Greshake B, Zhu W, Liu C, Lippert C, Stegle O, Schölkopf B, Weigel D, Borgwardt KM. Grimm DG, et al. Among authors: borgwardt km. Plant Cell. 2017 Jan;29(1):5-19. doi: 10.1105/tpc.16.00551. Epub 2016 Dec 16. Plant Cell. 2017. PMID: 27986896 Free PMC article.

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Genomic Profiles of Diversification and Genotype-Phenotype Association in Island Nematode Lineages.

McGaughran A, Rödelsperger C, Grimm DG, Meyer JM, Moreno E, Morgan K, Leaver M, Serobyan V, Rakitsch B, Borgwardt KM, Sommer RJ. McGaughran A, et al. Among authors: borgwardt km. Mol Biol Evol. 2016 Sep;33(9):2257-72. doi: 10.1093/molbev/msw093. Epub 2016 May 9. Mol Biol Evol. 2016. PMID: 27189551

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ShapePheno: unsupervised extraction of shape phenotypes from biological image collections.

Karaletsos T, Stegle O, Dreyer C, Winn J, Borgwardt KM. Karaletsos T, et al. Among authors: borgwardt km. Bioinformatics. 2012 Apr 1;28(7):1001-8. doi: 10.1093/bioinformatics/bts081. Epub 2012 Feb 13. Bioinformatics. 2012. PMID: 22333244

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The evaluation of tools used to predict the impact of missense variants is hindered by two types of circularity.

Grimm DG, Azencott CA, Aicheler F, Gieraths U, MacArthur DG, Samocha KE, Cooper DN, Stenson PD, Daly MJ, Smoller JW, Duncan LE, Borgwardt KM. Grimm DG, et al. Among authors: borgwardt km. Hum Mutat. 2015 May;36(5):513-23. doi: 10.1002/humu.22768. Epub 2015 Mar 26. Hum Mutat. 2015. PMID: 25684150 Free PMC article.

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