Bussemaker HJ[au] - Search Results

Year	Number of Results
1993	1
1995	1
1996	2
2000	2
2001	1
2002	3
2003	7
2004	2
2005	3
2006	4
2007	4
2008	4
2010	4
2011	2
2012	4
2013	3
2014	8
2015	6
2016	2
2017	4
2018	4
2019	4
2020	2
2022	3
2023	0

1

Recent progress in understanding transcription factor binding specificity.

Bussemaker HJ. Bussemaker HJ. Brief Funct Genomics. 2015 Jan;14(1):1-2. doi: 10.1093/bfgp/elu050. Brief Funct Genomics. 2015. PMID: 25617355 No abstract available.

2

DAF-16 and PQM-1: partners in longevity.

Tepper RG, Murphy CT, Bussemaker HJ. Tepper RG, et al. Among authors: bussemaker hj. Aging (Albany NY). 2014 Jan;6(1):5-6. doi: 10.18632/aging.100628. Aging (Albany NY). 2014. PMID: 24398388 Free PMC article. No abstract available.

3

Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.

Gao F, Foat BC, Bussemaker HJ. Gao F, et al. Among authors: bussemaker hj. BMC Bioinformatics. 2004 Mar 18;5:31. doi: 10.1186/1471-2105-5-31. BMC Bioinformatics. 2004. PMID: 15113405 Free PMC article.

4

In search of the determinants of enhancer-promoter interaction specificity.

van Arensbergen J, van Steensel B, Bussemaker HJ. van Arensbergen J, et al. Among authors: bussemaker hj. Trends Cell Biol. 2014 Nov;24(11):695-702. doi: 10.1016/j.tcb.2014.07.004. Epub 2014 Aug 24. Trends Cell Biol. 2014. PMID: 25160912 Free PMC article. Review.

5

Low-Affinity Binding Sites and the Transcription Factor Specificity Paradox in Eukaryotes.

Kribelbauer JF, Rastogi C, Bussemaker HJ, Mann RS. Kribelbauer JF, et al. Among authors: bussemaker hj. Annu Rev Cell Dev Biol. 2019 Oct 6;35:357-379. doi: 10.1146/annurev-cellbio-100617-062719. Epub 2019 Jul 5. Annu Rev Cell Dev Biol. 2019. PMID: 31283382 Free PMC article. Review.

6

Toward a Mechanistic Understanding of DNA Methylation Readout by Transcription Factors.

Kribelbauer JF, Lu XJ, Rohs R, Mann RS, Bussemaker HJ. Kribelbauer JF, et al. Among authors: bussemaker hj. J Mol Biol. 2019 Nov 2:S0022-2836(19)30617-5. doi: 10.1016/j.jmb.2019.10.021. Online ahead of print. J Mol Biol. 2019. PMID: 31689433 Free PMC article. Review.

7

REDUCE: An online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data.

Roven C, Bussemaker HJ. Roven C, et al. Among authors: bussemaker hj. Nucleic Acids Res. 2003 Jul 1;31(13):3487-90. doi: 10.1093/nar/gkg630. Nucleic Acids Res. 2003. PMID: 12824350 Free PMC article.

8

Transcription factor regulation of eQTL activity across individuals and tissues.

Flynn ED, Tsu AL, Kasela S, Kim-Hellmuth S, Aguet F, Ardlie KG, Bussemaker HJ, Mohammadi P, Lappalainen T. Flynn ED, et al. Among authors: bussemaker hj. PLoS Genet. 2022 Jan 31;18(1):e1009719. doi: 10.1371/journal.pgen.1009719. eCollection 2022 Jan. PLoS Genet. 2022. PMID: 35100260 Free PMC article.

9

Evolving insights on how cytosine methylation affects protein-DNA binding.

Dantas Machado AC, Zhou T, Rao S, Goel P, Rastogi C, Lazarovici A, Bussemaker HJ, Rohs R. Dantas Machado AC, et al. Among authors: bussemaker hj. Brief Funct Genomics. 2015 Jan;14(1):61-73. doi: 10.1093/bfgp/elu040. Epub 2014 Oct 14. Brief Funct Genomics. 2015. PMID: 25319759 Free PMC article. Review.

10

Prediction of protein-ligand binding affinity from sequencing data with interpretable machine learning.

Rube HT, Rastogi C, Feng S, Kribelbauer JF, Li A, Becerra B, Melo LAN, Do BV, Li X, Adam HH, Shah NH, Mann RS, Bussemaker HJ. Rube HT, et al. Among authors: bussemaker hj. Nat Biotechnol. 2022 Oct;40(10):1520-1527. doi: 10.1038/s41587-022-01307-0. Epub 2022 May 23. Nat Biotechnol. 2022. PMID: 35606422 Free PMC article.

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