Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My Custom Filters

Results by year

Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1947 1
1987 1
2001 1
2002 2
2003 1
2004 1
2005 1
2008 2
2009 4
2010 6
2011 6
2012 4
2013 1
2014 5
2015 6
2016 8
2017 7
2018 17
2019 13
2020 22
2021 24
2022 25
2023 22
2024 16
2025 4

Publication date

Text availability

Article attribute

Article type

Additional filters

Article Language

Species

Sex

Age

Other

Search Results

181 results

Results by year

Filters applied: . Clear all
Page 1
Image-based cell phenotyping with deep learning.
Pratapa A, Doron M, Caicedo JC. Pratapa A, et al. Among authors: caicedo jc. Curr Opin Chem Biol. 2021 Dec;65:9-17. doi: 10.1016/j.cbpa.2021.04.001. Epub 2021 May 21. Curr Opin Chem Biol. 2021. PMID: 34023800 Review.
SARS-CoV-2 Infection Causes Dopaminergic Neuron Senescence.
Han Y, Yang L, Kim TW, Nair MS, Harschnitz O, Wang P, Zhu J, Koo SY, Tang X, Lacko LA, Chandar V, Bram Y, Zhang T, Zhang W, He F, Caicedo J, Huang Y, Evans T, van der Valk P, Titulaer MJ, Spoor JKH, Furler RL, Canoll P, Goldman JE, Przedborski S, Schwartz RE, Ho DD, Studer L, Chen S. Han Y, et al. Among authors: caicedo j. Res Sq [Preprint]. 2021 May 21:rs.3.rs-513461. doi: 10.21203/rs.3.rs-513461/v1. Res Sq. 2021. Update in: Cell Stem Cell. 2024 Feb 1;31(2):196-211.e6. doi: 10.1016/j.stem.2023.12.012. PMID: 34031650 Free PMC article. Updated. Preprint.
Prioritizing Early Disease Intervention.
Caicedo HH, Darrow JJ, Caicedo JC, Pentland A. Caicedo HH, et al. Among authors: caicedo jc. Ther Innov Regul Sci. 2023 Nov;57(6):1148-1152. doi: 10.1007/s43441-023-00569-3. Epub 2023 Sep 5. Ther Innov Regul Sci. 2023. PMID: 37668879
Incidence, management and outcomes in hepatic artery complications after paediatric liver transplantation: protocol of the retrospective, international, multicentre HEPATIC Registry.
Li W, van der Doef HPJ, Wildhaber BE, Marra P, Bravi M, Pinelli D, Minetto J, Dip M, Sierre S, de Santibañes M, Ardiles V, Uno JW, Hardikar W, Bates S, Goh L, Aldrian D, Seisenbacher J, Vogel GF, Neto JS, Antunes da Fonseca E, Magalhães Costa C, Ferreira CT, Nader LS, Farina MA, Dajani KZ, Parente A, Bigam DL, Liang TB, Bai X, Zhang W, Gonsorčíková L, Froněk J, Bohuš Š, Franchi-Abella S, Gonzales E, Guérin F, Junge N, Baumann U, Richter N, Hartleif S, Sturm E, Rajakannu M, Palaniappan K, Rela M, Pawaria A, Rajakrishnan H, Surendran S, Kumar M, Agarwal S, Gupta S, Asthana S, Bandewar V, Raichurkar K, Spada M, Monti L, Alterio T, Yanagi Y, Uchida H, Komine R, Evans H, Carr-Boyd P, Duncan D, Stefanowicz M, Latka-Grot J, Kolesnik A, Broering DC, Raptis DA, Ann H Marquez K, Mali V, Aw M, Beretta M, Van der Schyff F, Quintero-Bernabeu J, Mercadal-Hally M, Larrarte K M, Andres AM, Hernandez-Oliveros F, Frauca E, Casswall T, Jorns C, Delle M, Gupte G, Sharif K, McGuirk S, Superina R, Caicedo JC, Jaramillo C, Bitterfeld L, Kastenberg Z, Shah AA, Domenick B, Acord MR, Mazariegos GV, Soltys K, DiNorcia J, Antala S, Florman SS, Buchholz BM, Herden U, Fischer L, Dierckx RAJO, Hartog H, … See abstract for full author list ➔ Li W, et al. Among authors: caicedo jc. BMJ Open. 2024 Jun 12;14(6):e081933. doi: 10.1136/bmjopen-2023-081933. BMJ Open. 2024. PMID: 38866577 Free PMC article.
Applications in image-based profiling of perturbations.
Caicedo JC, Singh S, Carpenter AE. Caicedo JC, et al. Curr Opin Biotechnol. 2016 Jun;39:134-142. doi: 10.1016/j.copbio.2016.04.003. Epub 2016 Apr 17. Curr Opin Biotechnol. 2016. PMID: 27089218 Free article. Review.
Roadmap on Deep Learning for Microscopy.
Volpe G, Wählby C, Tian L, Hecht M, Yakimovich A, Monakhova K, Waller L, Sbalzarini IF, Metzler CA, Xie M, Zhang K, Lenton ICD, Rubinsztein-Dunlop H, Brunner D, Bai B, Ozcan A, Midtvedt D, Wang H, Sladoje N, Lindblad J, Smith JT, Ochoa M, Barroso M, Intes X, Qiu T, Yu LY, You S, Liu Y, Ziatdinov MA, Kalinin SV, Sheridan A, Manor U, Nehme E, Goldenberg O, Shechtman Y, Moberg HK, Langhammer C, Špačková B, Helgadottir S, Midtvedt B, Argun A, Thalheim T, Cichos F, Bo S, Hubatsch L, Pineda J, Manzo C, Bachimanchi H, Selander E, Homs-Corbera A, Fränzl M, de Haan K, Rivenson Y, Korczak Z, Adiels CB, Mijalkov M, Veréb D, Chang YW, Pereira JB, Matuszewski D, Kylberg G, Sintorn IM, Caicedo JC, Cimini BA, Bell MAL, Saraiva BM, Jacquemet G, Henriques R, Ouyang W, Le T, Gómez-de-Mariscal E, Sage D, Muñoz-Barrutia A, Lindqvist EJ, Bergman J. Volpe G, et al. Among authors: caicedo jc. ArXiv [Preprint]. 2023 Mar 7:arXiv:2303.03793v1. ArXiv. 2023. PMID: 36945686 Free PMC article. Preprint.
Reproducible image-based profiling with Pycytominer.
Serrano E, Chandrasekaran SN, Bunten D, Brewer KI, Tomkinson J, Kern R, Bornholdt M, Fleming S, Pei R, Arevalo J, Tsang H, Rubinetti V, Tromans-Coia C, Becker T, Weisbart E, Bunne C, Kalinin AA, Senft R, Taylor SJ, Jamali N, Adeboye A, Abbasi HS, Goodman A, Caicedo JC, Carpenter AE, Cimini BA, Singh S, Way GP. Serrano E, et al. Among authors: caicedo jc. ArXiv [Preprint]. 2024 Jul 2:arXiv:2311.13417v2. ArXiv. 2024. PMID: 38045474 Free PMC article. Preprint.
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations.
Chandrasekaran SN, Cimini BA, Goodale A, Miller L, Kost-Alimova M, Jamali N, Doench JG, Fritchman B, Skepner A, Melanson M, Kalinin AA, Arevalo J, Haghighi M, Caicedo JC, Kuhn D, Hernandez D, Berstler J, Shafqat-Abbasi H, Root DE, Swalley SE, Garg S, Singh S, Carpenter AE. Chandrasekaran SN, et al. Among authors: caicedo jc. Nat Methods. 2024 Jun;21(6):1114-1121. doi: 10.1038/s41592-024-02241-6. Epub 2024 Apr 9. Nat Methods. 2024. PMID: 38594452 Free PMC article.
Walking speed measurement technology: A review.
MejiaCruz Y, Franco J, Hainline G, Fritz S, Jiang Z, Caicedo JM, Davis B, Hirth V. MejiaCruz Y, et al. Among authors: caicedo jm. Curr Geriatr Rep. 2021 Mar;10(1):32-41. doi: 10.1007/s13670-020-00349-z. Epub 2021 Jan 20. Curr Geriatr Rep. 2021. PMID: 33816062 Free PMC article.
Segmentation metric misinterpretations in bioimage analysis.
Hirling D, Tasnadi E, Caicedo J, Caroprese MV, Sjögren R, Aubreville M, Koos K, Horvath P. Hirling D, et al. Among authors: caicedo j. Nat Methods. 2024 Feb;21(2):213-216. doi: 10.1038/s41592-023-01942-8. Epub 2023 Jul 27. Nat Methods. 2024. PMID: 37500758 Free PMC article.
181 results