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A2B-COVID: A Tool for Rapidly Evaluating Potential SARS-CoV-2 Transmission Events.
Illingworth CJR, Hamilton WL, Jackson C, Warne B, Popay A, Meredith L, Hosmillo M, Jahun A, Fieldman T, Routledge M, Houldcroft CJ, Caller L, Caddy S, Yakovleva A, Hall G, Khokhar FA, Feltwell T, Pinckert ML, Georgana I, Chaudhry Y, Curran M, Parmar S, Sparkes D, Rivett L, Jones NK, Sridhar S, Forrest S, Dymond T, Grainger K, Workman C, Gkrania-Klotsas E, Brown NM, Weekes MP, Baker S, Peacock SJ, Gouliouris T, Goodfellow I, Angelis D, Török ME. Illingworth CJR, et al. Among authors: caller l. Mol Biol Evol. 2022 Mar 2;39(3):msac025. doi: 10.1093/molbev/msac025. Mol Biol Evol. 2022. PMID: 35106603 Free PMC article.
Patterns of within-host genetic diversity in SARS-CoV-2.
Tonkin-Hill G, Martincorena I, Amato R, Lawson ARJ, Gerstung M, Johnston I, Jackson DK, Park N, Lensing SV, Quail MA, Gonçalves S, Ariani C, Spencer Chapman M, Hamilton WL, Meredith LW, Hall G, Jahun AS, Chaudhry Y, Hosmillo M, Pinckert ML, Georgana I, Yakovleva A, Caller LG, Caddy SL, Feltwell T, Khokhar FA, Houldcroft CJ, Curran MD, Parmar S; COVID-19 Genomics UK (COG-UK) Consortium; Alderton A, Nelson R, Harrison EM, Sillitoe J, Bentley SD, Barrett JC, Torok ME, Goodfellow IG, Langford C, Kwiatkowski D; Wellcome Sanger Institute COVID-19 Surveillance Team. Tonkin-Hill G, et al. Among authors: caller lg. Elife. 2021 Aug 13;10:e66857. doi: 10.7554/eLife.66857. Elife. 2021. PMID: 34387545 Free PMC article.
Genomic epidemiology of COVID-19 in care homes in the east of England.
Hamilton WL, Tonkin-Hill G, Smith ER, Aggarwal D, Houldcroft CJ, Warne B, Meredith LW, Hosmillo M, Jahun AS, Curran MD, Parmar S, Caller LG, Caddy SL, Khokhar FA, Yakovleva A, Hall G, Feltwell T, Pinckert ML, Georgana I, Chaudhry Y, Brown CS, Gonçalves S, Amato R, Harrison EM, Brown NM, Beale MA, Spencer Chapman M, Jackson DK, Johnston I, Alderton A, Sillitoe J, Langford C, Dougan G, Peacock SJ, Kwiatowski DP, Goodfellow IG, Torok ME; COVID-19 Genomics Consortium UK. Hamilton WL, et al. Among authors: caller lg. Elife. 2021 Mar 2;10:e64618. doi: 10.7554/eLife.64618. Elife. 2021. PMID: 33650490 Free PMC article.
Superspreaders drive the largest outbreaks of hospital onset COVID-19 infections.
Illingworth CJ, Hamilton WL, Warne B, Routledge M, Popay A, Jackson C, Fieldman T, Meredith LW, Houldcroft CJ, Hosmillo M, Jahun AS, Caller LG, Caddy SL, Yakovleva A, Hall G, Khokhar FA, Feltwell T, Pinckert ML, Georgana I, Chaudhry Y, Curran MD, Parmar S, Sparkes D, Rivett L, Jones NK, Sridhar S, Forrest S, Dymond T, Grainger K, Workman C, Ferris M, Gkrania-Klotsas E, Brown NM, Weekes MP, Baker S, Peacock SJ, Goodfellow IG, Gouliouris T, de Angelis D, Török ME. Illingworth CJ, et al. Among authors: caller lg. Elife. 2021 Aug 24;10:e67308. doi: 10.7554/eLife.67308. Elife. 2021. PMID: 34425938 Free PMC article.
Coding-Complete Genome Sequences and Mutation Profiles of Nine SARS-CoV-2 Strains Detected from COVID-19 Patients in Bangladesh.
Adnan N, Khondoker MU, Rahman MS, Ahmed MF, Sharmin S, Sharif N, Azmuda N, Akter S, Nahar S, Mou TJ, Marzan M, Liza SM, Jahan N, Ali T, Khandker SS, Jamiruddin M, Chaity MA, Caller LG, Haq MA, Jamiruddin MR. Adnan N, et al. Among authors: caller lg. Microbiol Resour Announc. 2021 Mar 11;10(10):e00124-21. doi: 10.1128/MRA.00124-21. Microbiol Resour Announc. 2021. PMID: 33707329 Free PMC article.
Agnoprotein Is an Essential Egress Factor during BK Polyomavirus Infection.
Panou MM, Prescott EL, Hurdiss DL, Swinscoe G, Hollinshead M, Caller LG, Morgan EL, Carlisle L, Müller M, Antoni M, Kealy D, Ranson NA, Crump CM, Macdonald A. Panou MM, et al. Among authors: caller lg. Int J Mol Sci. 2018 Mar 19;19(3):902. doi: 10.3390/ijms19030902. Int J Mol Sci. 2018. PMID: 29562663 Free PMC article.
Rapid implementation of SARS-CoV-2 sequencing to investigate cases of health-care associated COVID-19: a prospective genomic surveillance study.
Meredith LW, Hamilton WL, Warne B, Houldcroft CJ, Hosmillo M, Jahun AS, Curran MD, Parmar S, Caller LG, Caddy SL, Khokhar FA, Yakovleva A, Hall G, Feltwell T, Forrest S, Sridhar S, Weekes MP, Baker S, Brown N, Moore E, Popay A, Roddick I, Reacher M, Gouliouris T, Peacock SJ, Dougan G, Török ME, Goodfellow I. Meredith LW, et al. Among authors: caller lg. Lancet Infect Dis. 2020 Nov;20(11):1263-1272. doi: 10.1016/S1473-3099(20)30562-4. Epub 2020 Jul 14. Lancet Infect Dis. 2020. PMID: 32679081 Free PMC article.