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Year Number of Results
1998 1
2019 4
2021 4
2022 1
2023 2
2024 0

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Page 1
Aberrant splicing prediction across human tissues.
Wagner N, Çelik MH, Hölzlwimmer FR, Mertes C, Prokisch H, Yépez VA, Gagneur J. Wagner N, et al. Among authors: celik mh. Nat Genet. 2023 May;55(5):861-870. doi: 10.1038/s41588-023-01373-3. Epub 2023 May 4. Nat Genet. 2023. PMID: 37142848
Personalized Metabolic Analysis of Diseases.
Cakmak A, Celik MH. Cakmak A, et al. Among authors: celik mh. IEEE/ACM Trans Comput Biol Bioinform. 2021 May-Jun;18(3):1014-1025. doi: 10.1109/TCBB.2020.3008196. Epub 2021 Jun 3. IEEE/ACM Trans Comput Biol Bioinform. 2021. PMID: 32750887
Detection of aberrant splicing events in RNA-seq data using FRASER.
Mertes C, Scheller IF, Yépez VA, Çelik MH, Liang Y, Kremer LS, Gusic M, Prokisch H, Gagneur J. Mertes C, et al. Among authors: celik mh. Nat Commun. 2021 Jan 22;12(1):529. doi: 10.1038/s41467-020-20573-7. Nat Commun. 2021. PMID: 33483494 Free PMC article.
Assessing predictions of the impact of variants on splicing in CAGI5.
Mount SM, Avsec Ž, Carmel L, Casadio R, Çelik MH, Chen K, Cheng J, Cohen NE, Fairbrother WG, Fenesh T, Gagneur J, Gotea V, Holzer T, Lin CF, Martelli PL, Naito T, Nguyen TYD, Savojardo C, Unger R, Wang R, Yang Y, Zhao H. Mount SM, et al. Among authors: celik mh. Hum Mutat. 2019 Sep;40(9):1215-1224. doi: 10.1002/humu.23869. Epub 2019 Aug 19. Hum Mutat. 2019. PMID: 31301154 Free PMC article.
The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.
Reese F, Williams B, Balderrama-Gutierrez G, Wyman D, Çelik MH, Rebboah E, Rezaie N, Trout D, Razavi-Mohseni M, Jiang Y, Borsari B, Morabito S, Liang HY, McGill CJ, Rahmanian S, Sakr J, Jiang S, Zeng W, Carvalho K, Weimer AK, Dionne LA, McShane A, Bedi K, Elhajjajy SI, Upchurch S, Jou J, Youngworth I, Gabdank I, Sud P, Jolanki O, Strattan JS, Kagda MS, Snyder MP, Hitz BC, Moore JE, Weng Z, Bennett D, Reinholdt L, Ljungman M, Beer MA, Gerstein MB, Pachter L, Guigó R, Wold BJ, Mortazavi A. Reese F, et al. Among authors: celik mh. bioRxiv [Preprint]. 2023 May 16:2023.05.15.540865. doi: 10.1101/2023.05.15.540865. bioRxiv. 2023. PMID: 37292896 Free PMC article. Preprint.
12 results