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2015 3
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2019 2
2020 1
2021 2
2024 0

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Page 1
Optimizing network propagation for multi-omics data integration.
Charmpi K, Chokkalingam M, Johnen R, Beyer A. Charmpi K, et al. PLoS Comput Biol. 2021 Nov 11;17(11):e1009161. doi: 10.1371/journal.pcbi.1009161. eCollection 2021 Nov. PLoS Comput Biol. 2021. PMID: 34762640 Free PMC article.
Deciphering the signaling network of breast cancer improves drug sensitivity prediction.
Tognetti M, Gabor A, Yang M, Cappelletti V, Windhager J, Rueda OM, Charmpi K, Esmaeilishirazifard E, Bruna A, de Souza N, Caldas C, Beyer A, Picotti P, Saez-Rodriguez J, Bodenmiller B. Tognetti M, et al. Among authors: charmpi k. Cell Syst. 2021 May 19;12(5):401-418.e12. doi: 10.1016/j.cels.2021.04.002. Epub 2021 Apr 30. Cell Syst. 2021. PMID: 33932331 Free article.
Several immune escape patterns in non-Hodgkin's lymphomas.
Laurent C, Charmpi K, Gravelle P, Tosolini M, Franchet C, Ysebaert L, Brousset P, Bidaut A, Ycart B, Fournié JJ. Laurent C, et al. Among authors: charmpi k. Oncoimmunology. 2015 Apr 2;4(8):e1026530. doi: 10.1080/2162402X.2015.1026530. eCollection 2015 Aug. Oncoimmunology. 2015. PMID: 26405585 Free PMC article.
Convergent network effects along the axis of gene expression during prostate cancer progression.
Charmpi K, Guo T, Zhong Q, Wagner U, Sun R, Toussaint NC, Fritz CE, Yuan C, Chen H, Rupp NJ, Christiansen A, Rutishauser D, Rüschoff JH, Fankhauser C, Saba K, Poyet C, Hermanns T, Oehl K, Moore AL, Beisel C, Calzone L, Martignetti L, Zhang Q, Zhu Y, Martínez MR, Manica M, Haffner MC, Aebersold R, Wild PJ, Beyer A. Charmpi K, et al. Genome Biol. 2020 Dec 14;21(1):302. doi: 10.1186/s13059-020-02188-9. Genome Biol. 2020. PMID: 33317623 Free PMC article.
Proteomics-Based Monitoring of Pathway Activity Reveals that Blocking Diacylglycerol Biosynthesis Rescues from Alpha-Synuclein Toxicity.
Soste M, Charmpi K, Lampert F, Gerez JA, van Oostrum M, Malinovska L, Boersema PJ, Prymaczok NC, Riek R, Peter M, Vanni S, Beyer A, Picotti P. Soste M, et al. Among authors: charmpi k. Cell Syst. 2019 Sep 25;9(3):309-320.e8. doi: 10.1016/j.cels.2019.07.010. Epub 2019 Sep 11. Cell Syst. 2019. PMID: 31521608 Free PMC article.
Comparative analysis of mRNA and protein degradation in prostate tissues indicates high stability of proteins.
Shao W, Guo T, Toussaint NC, Xue P, Wagner U, Li L, Charmpi K, Zhu Y, Wu J, Buljan M, Sun R, Rutishauser D, Hermanns T, Fankhauser CD, Poyet C, Ljubicic J, Rupp N, Rüschoff JH, Zhong Q, Beyer A, Ji J, Collins BC, Liu Y, Rätsch G, Wild PJ, Aebersold R. Shao W, et al. Among authors: charmpi k. Nat Commun. 2019 Jun 7;10(1):2524. doi: 10.1038/s41467-019-10513-5. Nat Commun. 2019. PMID: 31175306 Free PMC article.