Chifman J[au] - Search Results

Year	Number of Results
2012	1
2014	2
2015	1
2016	2
2017	1
2018	1
2019	1
2020	1
2021	1
2022	3
2023	0

1

A systems biology approach to iron metabolism.

Chifman J, Laubenbacher R, Torti SV. Chifman J, et al. Adv Exp Med Biol. 2014;844:201-25. doi: 10.1007/978-1-4939-2095-2_10. Adv Exp Med Biol. 2014. PMID: 25480643 Free PMC article. Review.

2

Bulk and Single-Cell Profiling of Breast Tumors Identifies TREM-1 as a Dominant Immune Suppressive Marker Associated With Poor Outcomes.

Pullikuth AK, Routh ED, Zimmerman KD, Chifman J, Chou JW, Soike MH, Jin G, Su J, Song Q, Black MA, Print C, Bedognetti D, Howard-McNatt M, O'Neill SS, Thomas A, Langefeld CD, Sigalov AB, Lu Y, Miller LD. Pullikuth AK, et al. Among authors: chifman j. Front Oncol. 2021 Dec 8;11:734959. doi: 10.3389/fonc.2021.734959. eCollection 2021. Front Oncol. 2021. PMID: 34956864 Free PMC article.

3

Cyclic attractors of nonexpanding q-ary networks.

Basser-Ravitz E, Darbar A, Chifman J. Basser-Ravitz E, et al. Among authors: chifman j. J Math Biol. 2022 Oct 6;85(5):45. doi: 10.1007/s00285-022-01796-2. J Math Biol. 2022. PMID: 36203069

4

SteadyCellPhenotype: a web-based tool for the modeling of biological networks with ternary logic.

Knapp AC, Sordo Vieira L, Laubenbacher R, Chifman J. Knapp AC, et al. Among authors: chifman j. Bioinformatics. 2022 Apr 12;38(8):2369-2370. doi: 10.1093/bioinformatics/btac097. Bioinformatics. 2022. PMID: 35179549

5

A phylogenetic approach to inferring the order in which mutations arise during cancer progression.

Gao Y, Gaither J, Chifman J, Kubatko L. Gao Y, et al. Among authors: chifman j. PLoS Comput Biol. 2022 Dec 2;18(12):e1010560. doi: 10.1371/journal.pcbi.1010560. eCollection 2022 Dec. PLoS Comput Biol. 2022. PMID: 36459515 Free PMC article.

6

HyDe: A Python Package for Genome-Scale Hybridization Detection.

Blischak PD, Chifman J, Wolfe AD, Kubatko LS. Blischak PD, et al. Among authors: chifman j. Syst Biol. 2018 Sep 1;67(5):821-829. doi: 10.1093/sysbio/syy023. Syst Biol. 2018. PMID: 29562307 Free PMC article.

7

Quartet inference from SNP data under the coalescent model.

Chifman J, Kubatko L. Chifman J, et al. Bioinformatics. 2014 Dec 1;30(23):3317-24. doi: 10.1093/bioinformatics/btu530. Epub 2014 Aug 7. Bioinformatics. 2014. PMID: 25104814 Free PMC article.

8

Transcriptomic Features of T Cell-Barren Tumors Are Conserved Across Diverse Tumor Types.

Routh ED, Pullikuth AK, Jin G, Chifman J, Chou JW, D'Agostino RB Jr, Seino KI, Wada H, Print CG, Zhang W, Lu Y, Miller LD. Routh ED, et al. Among authors: chifman j. Front Immunol. 2020 Feb 13;11:57. doi: 10.3389/fimmu.2020.00057. eCollection 2020. Front Immunol. 2020. PMID: 32117236 Free PMC article.

9

An invariants-based method for efficient identification of hybrid species from large-scale genomic data.

Kubatko LS, Chifman J. Kubatko LS, et al. Among authors: chifman j. BMC Evol Biol. 2019 May 30;19(1):112. doi: 10.1186/s12862-019-1439-7. BMC Evol Biol. 2019. PMID: 31146685 Free PMC article.

10

Conservation of immune gene signatures in solid tumors and prognostic implications.

Chifman J, Pullikuth A, Chou JW, Bedognetti D, Miller LD. Chifman J, et al. BMC Cancer. 2016 Nov 22;16(1):911. doi: 10.1186/s12885-016-2948-z. BMC Cancer. 2016. PMID: 27871313 Free PMC article.

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