Search Page

1

Cite

Share

OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species.

Xu L, Dong Z, Fang L, Luo Y, Wei Z, Guo H, Zhang G, Gu YQ, Coleman-Derr D, Xia Q, Wang Y. Xu L, et al. Among authors: coleman derr d. Nucleic Acids Res. 2019 Jul 2;47(W1):W52-W58. doi: 10.1093/nar/gkz333. Nucleic Acids Res. 2019. PMID: 31053848 Free PMC article.

Cite

Share

2

Cite

Share

Plant immunity suppression via PHR1-RALF-FERONIA shapes the root microbiome to alleviate phosphate starvation.

Tang J, Wu D, Li X, Wang L, Xu L, Zhang Y, Xu F, Liu H, Xie Q, Dai S, Coleman-Derr D, Zhu S, Yu F. Tang J, et al. Among authors: coleman derr d. EMBO J. 2022 Mar 15;41(6):e109102. doi: 10.15252/embj.2021109102. Epub 2022 Feb 11. EMBO J. 2022. PMID: 35146778

Cite

Share

3

Cite

Share

Holo-omics for deciphering plant-microbiome interactions.

Xu L, Pierroz G, Wipf HM, Gao C, Taylor JW, Lemaux PG, Coleman-Derr D. Xu L, et al. Among authors: coleman derr d. Microbiome. 2021 Mar 24;9(1):69. doi: 10.1186/s40168-021-01014-z. Microbiome. 2021. PMID: 33762001 Free PMC article. Review.

Cite

Share

4

Cite

Share

Drought Stress and Root-Associated Bacterial Communities.

Naylor D, Coleman-Derr D. Naylor D, et al. Among authors: coleman derr d. Front Plant Sci. 2018 Jan 9;8:2223. doi: 10.3389/fpls.2017.02223. eCollection 2017. Front Plant Sci. 2018. PMID: 29375600 Free PMC article. Review.

Cite

Share

5

Cite

Share

Plant single-cell solutions for energy and the environment.

Cole B, Bergmann D, Blaby-Haas CE, Blaby IK, Bouchard KE, Brady SM, Ciobanu D, Coleman-Derr D, Leiboff S, Mortimer JC, Nobori T, Rhee SY, Schmutz J, Simmons BA, Singh AK, Sinha N, Vogel JP, O'Malley RC, Visel A, Dickel DE. Cole B, et al. Among authors: coleman derr d. Commun Biol. 2021 Aug 12;4(1):962. doi: 10.1038/s42003-021-02477-4. Commun Biol. 2021. PMID: 34385583 Free PMC article. Review.

Cite

Share

6

Cite

Share

GSP: a web-based platform for designing genome-specific primers in polyploids.

Wang Y, Tiwari VK, Rawat N, Gill BS, Huo N, You FM, Coleman-Derr D, Gu YQ. Wang Y, et al. Among authors: coleman derr d. Bioinformatics. 2016 Aug 1;32(15):2382-3. doi: 10.1093/bioinformatics/btw134. Epub 2016 Mar 9. Bioinformatics. 2016. PMID: 27153733

Cite

Share

7

Cite

Share

Plant Microbiome-Based Genome-Wide Association Studies.

Deng S, Meier MA, Caddell D, Yang J, Coleman-Derr D. Deng S, et al. Among authors: coleman derr d. Methods Mol Biol. 2022;2481:353-367. doi: 10.1007/978-1-0716-2237-7_20. Methods Mol Biol. 2022. PMID: 35641774

Cite

Share

8

Cite

Share

Genome wide association study reveals plant loci controlling heritability of the rhizosphere microbiome.

Deng S, Caddell DF, Xu G, Dahlen L, Washington L, Yang J, Coleman-Derr D. Deng S, et al. Among authors: coleman derr d. ISME J. 2021 Nov;15(11):3181-3194. doi: 10.1038/s41396-021-00993-z. Epub 2021 May 12. ISME J. 2021. PMID: 33980999 Free PMC article.

Cite

Share

9

Cite

Share

Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics.

Xu L, Dong Z, Chiniquy D, Pierroz G, Deng S, Gao C, Diamond S, Simmons T, Wipf HM, Caddell D, Varoquaux N, Madera MA, Hutmacher R, Deutschbauer A, Dahlberg JA, Guerinot ML, Purdom E, Banfield JF, Taylor JW, Lemaux PG, Coleman-Derr D. Xu L, et al. Among authors: coleman derr d. Nat Commun. 2021 May 28;12(1):3209. doi: 10.1038/s41467-021-23553-7. Nat Commun. 2021. PMID: 34050180 Free PMC article.

Cite

Share

10

Cite

Share

Drought Drives Spatial Variation in the Millet Root Microbiome.

Simmons T, Styer AB, Pierroz G, Gonçalves AP, Pasricha R, Hazra AB, Bubner P, Coleman-Derr D. Simmons T, et al. Among authors: coleman derr d. Front Plant Sci. 2020 May 28;11:599. doi: 10.3389/fpls.2020.00599. eCollection 2020. Front Plant Sci. 2020. PMID: 32547572 Free PMC article.

Cite

Share