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Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial.

Ludwig C, Gillet L, Rosenberger G, Amon S, Collins BC, Aebersold R. Ludwig C, et al. Among authors: collins bc. Mol Syst Biol. 2018 Aug 13;14(8):e8126. doi: 10.15252/msb.20178126. Mol Syst Biol. 2018. PMID: 30104418 Free PMC article. Review.

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The protein landscape of chronic lymphocytic leukemia.

Meier-Abt F, Lu J, Cannizzaro E, Pohly MF, Kummer S, Pfammatter S, Kunz L, Collins BC, Nadeu F, Lee KS, Xue P, Gwerder M, Roiss M, Hüllein J, Scheinost S, Dietrich S, Campo E, Huber W, Aebersold R, Zenz T. Meier-Abt F, et al. Among authors: collins bc. Blood. 2021 Dec 16;138(24):2514-2525. doi: 10.1182/blood.2020009741. Blood. 2021. PMID: 34189564

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diaPASEF: parallel accumulation-serial fragmentation combined with data-independent acquisition.

Meier F, Brunner AD, Frank M, Ha A, Bludau I, Voytik E, Kaspar-Schoenefeld S, Lubeck M, Raether O, Bache N, Aebersold R, Collins BC, Röst HL, Mann M. Meier F, et al. Among authors: collins bc. Nat Methods. 2020 Dec;17(12):1229-1236. doi: 10.1038/s41592-020-00998-0. Epub 2020 Nov 30. Nat Methods. 2020. PMID: 33257825

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Proteomics goes parallel.

Collins BC, Aebersold R. Collins BC, et al. Nat Biotechnol. 2018 Nov 9;36(11):1051-1053. doi: 10.1038/nbt.4288. Nat Biotechnol. 2018. PMID: 30412198 No abstract available.

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Systematic detection of functional proteoform groups from bottom-up proteomic datasets.

Bludau I, Frank M, Dörig C, Cai Y, Heusel M, Rosenberger G, Picotti P, Collins BC, Röst H, Aebersold R. Bludau I, et al. Among authors: collins bc. Nat Commun. 2021 Jun 21;12(1):3810. doi: 10.1038/s41467-021-24030-x. Nat Commun. 2021. PMID: 34155216 Free PMC article.

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Complex-centric proteome profiling by SEC-SWATH-MS.

Heusel M, Bludau I, Rosenberger G, Hafen R, Frank M, Banaei-Esfahani A, van Drogen A, Collins BC, Gstaiger M, Aebersold R. Heusel M, et al. Among authors: collins bc. Mol Syst Biol. 2019 Jan 14;15(1):e8438. doi: 10.15252/msb.20188438. Mol Syst Biol. 2019. PMID: 30642884 Free PMC article.

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Diagnostics and correction of batch effects in large-scale proteomic studies: a tutorial.

Čuklina J, Lee CH, Williams EG, Sajic T, Collins BC, Rodríguez Martínez M, Sharma VS, Wendt F, Goetze S, Keele GR, Wollscheid B, Aebersold R, Pedrioli PGA. Čuklina J, et al. Among authors: collins bc. Mol Syst Biol. 2021 Aug;17(8):e10240. doi: 10.15252/msb.202110240. Mol Syst Biol. 2021. PMID: 34432947 Free PMC article. Review.

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It takes all kinds: heterogeneity among satellite cells and fibro-adipogenic progenitors during skeletal muscle regeneration.

Collins BC, Kardon G. Collins BC, et al. Development. 2021 Nov 1;148(21):dev199861. doi: 10.1242/dev.199861. Epub 2021 Nov 5. Development. 2021. PMID: 34739030 Review.

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Expression Dysregulation as a Mediator of Fitness Costs in Antibiotic Resistance.

Trauner A, Banaei-Esfahani A, Gygli SM, Warmer P, Feldmann J, Zampieri M, Borrell S, Collins BC, Beisel C, Aebersold R, Gagneux S. Trauner A, et al. Among authors: collins bc. Antimicrob Agents Chemother. 2021 Aug 17;65(9):e0050421. doi: 10.1128/AAC.00504-21. Epub 2021 Aug 17. Antimicrob Agents Chemother. 2021. PMID: 34228548 Free PMC article.

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Novel lamprey antibody recognizes terminal sulfated galactose epitopes on mammalian glycoproteins.

McKitrick TR, Bernard SM, Noll AJ, Collins BC, Goth CK, McQuillan AM, Heimburg-Molinaro J, Herrin BR, Wilson IA, Cooper MD, Cummings RD. McKitrick TR, et al. Among authors: collins bc. Commun Biol. 2021 Jun 3;4(1):674. doi: 10.1038/s42003-021-02199-7. Commun Biol. 2021. PMID: 34083726 Free PMC article.

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