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2022 5
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SARS-CoV-2 Omicron-B.1.1.529 leads to widespread escape from neutralizing antibody responses.
Dejnirattisai W, Huo J, Zhou D, Zahradník J, Supasa P, Liu C, Duyvesteyn HME, Ginn HM, Mentzer AJ, Tuekprakhon A, Nutalai R, Wang B, Dijokaite A, Khan S, Avinoam O, Bahar M, Skelly D, Adele S, Johnson SA, Amini A, Ritter TG, Mason C, Dold C, Pan D, Assadi S, Bellass A, Omo-Dare N, Koeckerling D, Flaxman A, Jenkin D, Aley PK, Voysey M, Costa Clemens SA, Naveca FG, Nascimento V, Nascimento F, Fernandes da Costa C, Resende PC, Pauvolid-Correa A, Siqueira MM, Baillie V, Serafin N, Kwatra G, Da Silva K, Madhi SA, Nunes MC, Malik T, Openshaw PJM, Baillie JK, Semple MG, Townsend AR, Huang KA, Tan TK, Carroll MW, Klenerman P, Barnes E, Dunachie SJ, Constantinides B, Webster H, Crook D, Pollard AJ, Lambe T; OPTIC Consortium; ISARIC4C Consortium, Paterson NG, Williams MA, Hall DR, Fry EE, Mongkolsapaya J, Ren J, Schreiber G, Stuart DI, Screaton GR. Dejnirattisai W, et al. Among authors: constantinides b. Cell. 2022 Feb 3;185(3):467-484.e15. doi: 10.1016/j.cell.2021.12.046. Epub 2022 Jan 4. Cell. 2022. PMID: 35081335 Free PMC article.
Omicron-B.1.1.529 leads to widespread escape from neutralizing antibody responses.
Dejnirattisai W, Huo J, Zhou D, Zahradník J, Supasa P, Liu C, Duyvesteyn HME, Ginn HM, Mentzer AJ, Tuekprakhon A, Nutalai R, Wang B, Dijokaite A, Khan S, Avinoam O, Bahar M, Skelly D, Adele S, Johnson SA, Amini A, Ritter T, Mason C, Dold C, Pan D, Assadi S, Bellass A, Omo-Dare N, Koeckerling D, Flaxman A, Jenkin D, Aley PK, Voysey M, Clemens SAC, Naveca FG, Nascimento V, Nascimento F, Fernandes da Costa C, Resende PC, Pauvolid-Correa A, Siqueira MM, Baillie V, Serafin N, Ditse Z, Da Silva K, Madhi S, Nunes MC, Malik T, Openshaw PJ, Baillie JK, Semple MG, Townsend AR, Huang KA, Tan TK, Carroll MW, Klenerman P, Barnes E, Dunachie SJ, Constantinides B, Webster H, Crook D, Pollard AJ, Lambe T; OPTIC consortium; ISARIC4C consortium, Paterson NG, Williams MA, Hall DR, Fry EE, Mongkolsapaya J, Ren J, Schreiber G, Stuart DI, Screaton GR. Dejnirattisai W, et al. Among authors: constantinides b. bioRxiv. 2021 Dec 22:2021.12.03.471045. doi: 10.1101/2021.12.03.471045. Preprint. bioRxiv. 2021. PMID: 34981049 Free PMC article. Updated.
An Observational Cohort Study on the Incidence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection and B.1.1.7 Variant Infection in Healthcare Workers by Antibody and Vaccination Status.
Lumley SF, Rodger G, Constantinides B, Sanderson N, Chau KK, Street TL, O'Donnell D, Howarth A, Hatch SB, Marsden BD, Cox S, James T, Warren F, Peck LJ, Ritter TG, de Toledo Z, Warren L, Axten D, Cornall RJ, Jones EY, Stuart DI, Screaton G, Ebner D, Hoosdally S, Chand M, Crook DW, O'Donnell AM, Conlon CP, Pouwels KB, Walker AS, Peto TEA, Hopkins S, Walker TM, Stoesser NE, Matthews PC, Jeffery K, Eyre DW; Oxford University Hospitals Staff Testing Group. Lumley SF, et al. Among authors: constantinides b. Clin Infect Dis. 2022 Apr 9;74(7):1208-1219. doi: 10.1093/cid/ciab608. Clin Infect Dis. 2022. PMID: 34216472 Free PMC article.
Challenges in the analysis of viral metagenomes.
Rose R, Constantinides B, Tapinos A, Robertson DL, Prosperi M. Rose R, et al. Among authors: constantinides b. Virus Evol. 2016 Aug 3;2(2):vew022. doi: 10.1093/ve/vew022. eCollection 2016 Jul. Virus Evol. 2016. PMID: 29492275 Free PMC article. Review.
Flanker: a tool for comparative genomics of gene flanking regions.
Matlock W, Lipworth S, Constantinides B, Peto TEA, Walker AS, Crook D, Hopkins S, Shaw LP, Stoesser N. Matlock W, et al. Among authors: constantinides b. Microb Genom. 2021 Sep;7(9):000634. doi: 10.1099/mgen.0.000634. Microb Genom. 2021. PMID: 34559044 Free PMC article.
Epidemiological data and genome sequencing reveals that nosocomial transmission of SARS-CoV-2 is underestimated and mostly mediated by a small number of highly infectious individuals.
Lumley SF, Constantinides B, Sanderson N, Rodger G, Street TL, Swann J, Chau KK, O'Donnell D, Warren F, Hoosdally S; OUH Microbiology laboratory; OUH Infection Prevention and Control team, O'Donnell AM, Walker TM, Stoesser NE, Butcher L, Peto TE, Crook DW, Jeffery K, Matthews PC, Eyre DW. Lumley SF, et al. Among authors: constantinides b. J Infect. 2021 Oct;83(4):473-482. doi: 10.1016/j.jinf.2021.07.034. Epub 2021 Jul 28. J Infect. 2021. PMID: 34332019 Free PMC article.
ReadItAndKeep: rapid decontamination of SARS-CoV-2 sequencing reads.
Hunt M, Swann J, Constantinides B, Fowler PW, Iqbal Z. Hunt M, et al. Among authors: constantinides b. Bioinformatics. 2022 May 13;38(12):3291-3. doi: 10.1093/bioinformatics/btac311. Online ahead of print. Bioinformatics. 2022. PMID: 35551365 Free PMC article.
Potent cross-reactive antibodies following Omicron breakthrough in vaccinees.
Nutalai R, Zhou D, Tuekprakhon A, Ginn HM, Supasa P, Liu C, Huo J, Mentzer AJ, Duyvesteyn HME, Dijokaite-Guraliuc A, Skelly D, Ritter TG, Amini A, Bibi S, Adele S, Johnson SA, Constantinides B, Webster H, Temperton N, Klenerman P, Barnes E, Dunachie SJ, Crook D, Pollard AJ, Lambe T, Goulder P; OPTIC consortium, ISARIC4C consortium, Paterson NG, Williams MA, Hall DR, Mongkolsapaya J, Fry EE, Dejnirattisai W, Ren J, Stuart DI, Screaton GR. Nutalai R, et al. Among authors: constantinides b. Cell. 2022 Jun 9;185(12):2116-2131.e18. doi: 10.1016/j.cell.2022.05.014. Epub 2022 May 20. Cell. 2022. PMID: 35662412 Free PMC article.
Genomic surveillance of Escherichia coli and Klebsiella spp. in hospital sink drains and patients.
Constantinides B, Chau KK, Quan TP, Rodger G, Andersson MI, Jeffery K, Lipworth S, Gweon HS, Peniket A, Pike G, Millo J, Byukusenge M, Holdaway M, Gibbons C, Mathers AJ, Crook DW, Peto TEA, Walker AS, Stoesser N. Constantinides B, et al. Microb Genom. 2020 Jul;6(7):mgen000391. doi: 10.1099/mgen.0.000391. Microb Genom. 2020. PMID: 32553019 Free PMC article.
Detecting macroecological patterns in bacterial communities across independent studies of global soils.
Ramirez KS, Knight CG, de Hollander M, Brearley FQ, Constantinides B, Cotton A, Creer S, Crowther TW, Davison J, Delgado-Baquerizo M, Dorrepaal E, Elliott DR, Fox G, Griffiths RI, Hale C, Hartman K, Houlden A, Jones DL, Krab EJ, Maestre FT, McGuire KL, Monteux S, Orr CH, van der Putten WH, Roberts IS, Robinson DA, Rocca JD, Rowntree J, Schlaeppi K, Shepherd M, Singh BK, Straathof AL, Bhatnagar JM, Thion C, van der Heijden MGA, de Vries FT. Ramirez KS, et al. Among authors: constantinides b. Nat Microbiol. 2018 Feb;3(2):189-196. doi: 10.1038/s41564-017-0062-x. Epub 2017 Nov 20. Nat Microbiol. 2018. PMID: 29158606
18 results