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Page 1
Standards recommendations for the Earth BioGenome Project.
Lawniczak MKN, Durbin R, Flicek P, Lindblad-Toh K, Wei X, Archibald JM, Baker WJ, Belov K, Blaxter ML, Marques Bonet T, Childers AK, Coddington JA, Crandall KA, Crawford AJ, Davey RP, Di Palma F, Fang Q, Haerty W, Hall N, Hoff KJ, Howe K, Jarvis ED, Johnson WE, Johnson RN, Kersey PJ, Liu X, Lopez JV, Myers EW, Pettersson OV, Phillippy AM, Poelchau MF, Pruitt KD, Rhie A, Castilla-Rubio JC, Sahu SK, Salmon NA, Soltis PS, Swarbreck D, Thibaud-Nissen F, Wang S, Wegrzyn JL, Zhang G, Zhang H, Lewin HA, Richards S. Lawniczak MKN, et al. Among authors: davey rp. Proc Natl Acad Sci U S A. 2022 Jan 25;119(4):e2115639118. doi: 10.1073/pnas.2115639118. Proc Natl Acad Sci U S A. 2022. PMID: 35042802 Free PMC article.
Aequatus: an open-source homology browser.
Thanki AS, Soranzo N, Herrero J, Haerty W, Davey RP. Thanki AS, et al. Among authors: davey rp. Gigascience. 2018 Nov 1;7(11):giy128. doi: 10.1093/gigascience/giy128. Gigascience. 2018. PMID: 30395211 Free PMC article.
Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement.
Gaurav K, Arora S, Silva P, Sánchez-Martín J, Horsnell R, Gao L, Brar GS, Widrig V, John Raupp W, Singh N, Wu S, Kale SM, Chinoy C, Nicholson P, Quiroz-Chávez J, Simmonds J, Hayta S, Smedley MA, Harwood W, Pearce S, Gilbert D, Kangara N, Gardener C, Forner-Martínez M, Liu J, Yu G, Boden SA, Pascucci A, Ghosh S, Hafeez AN, O'Hara T, Waites J, Cheema J, Steuernagel B, Patpour M, Justesen AF, Liu S, Rudd JC, Avni R, Sharon A, Steiner B, Kirana RP, Buerstmayr H, Mehrabi AA, Nasyrova FY, Chayut N, Matny O, Steffenson BJ, Sandhu N, Chhuneja P, Lagudah E, Elkot AF, Tyrrell S, Bian X, Davey RP, Simonsen M, Schauser L, Tiwari VK, Randy Kutcher H, Hucl P, Li A, Liu DC, Mao L, Xu S, Brown-Guedira G, Faris J, Dvorak J, Luo MC, Krasileva K, Lux T, Artmeier S, Mayer KFX, Uauy C, Mascher M, Bentley AR, Keller B, Poland J, Wulff BBH. Gaurav K, et al. Among authors: davey rp. Nat Biotechnol. 2022 Mar;40(3):422-431. doi: 10.1038/s41587-021-01058-4. Epub 2021 Nov 1. Nat Biotechnol. 2022. PMID: 34725503 Free PMC article.
ISA API: An open platform for interoperable life science experimental metadata.
Johnson D, Batista D, Cochrane K, Davey RP, Etuk A, Gonzalez-Beltran A, Haug K, Izzo M, Larralde M, Lawson TN, Minotto A, Moreno P, Nainala VC, O'Donovan C, Pireddu L, Roger P, Shaw F, Steinbeck C, Weber RJM, Sansone SA, Rocca-Serra P. Johnson D, et al. Among authors: davey rp. Gigascience. 2021 Sep 16;10(9):giab060. doi: 10.1093/gigascience/giab060. Gigascience. 2021. PMID: 34528664 Free PMC article.
Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR.
Waterhouse RM, Adam-Blondon AF, Agosti D, Baldrian P, Balech B, Corre E, Davey RP, Lantz H, Pesole G, Quast C, Glöckner FO, Raes N, Sandionigi A, Santamaria M, Addink W, Vohradsky J, Nunes-Jorge A, Willassen NP, Lanfear J. Waterhouse RM, et al. Among authors: davey rp. F1000Res. 2021 Dec 3;10:ELIXIR-1238. doi: 10.12688/f1000research.73825.2. eCollection 2021. F1000Res. 2021. PMID: 35999898 Free PMC article.
Data management challenges for artificial intelligence in plant and agricultural research.
Williamson HF, Brettschneider J, Caccamo M, Davey RP, Goble C, Kersey PJ, May S, Morris RJ, Ostler R, Pridmore T, Rawlings C, Studholme D, Tsaftaris SA, Leonelli S. Williamson HF, et al. Among authors: davey rp. F1000Res. 2021 Apr 27;10:324. doi: 10.12688/f1000research.52204.2. eCollection 2021. F1000Res. 2021. PMID: 36873457 Free PMC article.
CerealsDB-new tools for the analysis of the wheat genome: update 2020.
Wilkinson PA, Allen AM, Tyrrell S, Wingen LU, Bian X, Winfield MO, Burridge A, Shaw DS, Zaucha J, Griffiths S, Davey RP, Edwards KJ, Barker GLA. Wilkinson PA, et al. Among authors: davey rp. Database (Oxford). 2020 Jan 1;2020:baaa060. doi: 10.1093/database/baaa060. Database (Oxford). 2020. PMID: 32754757 Free PMC article.
25 results