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Page 1
The Visual Cortex in Context.
Froudarakis E, Fahey PG, Reimer J, Smirnakis SM, Tehovnik EJ, Tolias AS. Froudarakis E, et al. Among authors: fahey pg. Annu Rev Vis Sci. 2019 Sep 15;5:317-339. doi: 10.1146/annurev-vision-091517-034407. Annu Rev Vis Sci. 2019. PMID: 31525143 Free PMC article. Review.
Foundation model of neural activity predicts response to new stimulus types.
Wang EY, Fahey PG, Ding Z, Papadopoulos S, Ponder K, Weis MA, Chang A, Muhammad T, Patel S, Ding Z, Tran D, Fu J, Schneider-Mizell CM; MICrONS Consortium; Reid RC, Collman F, da Costa NM, Franke K, Ecker AS, Reimer J, Pitkow X, Sinz FH, Tolias AS. Wang EY, et al. Among authors: fahey pg. Nature. 2025 Apr;640(8058):470-477. doi: 10.1038/s41586-025-08829-y. Epub 2025 Apr 9. Nature. 2025. PMID: 40205215 Free PMC article.
Functional connectomics reveals general wiring rule in mouse visual cortex.
Ding Z, Fahey PG, Papadopoulos S, Wang EY, Celii B, Papadopoulos C, Chang A, Kunin AB, Tran D, Fu J, Ding Z, Patel S, Ntanavara L, Froebe R, Ponder K, Muhammad T, Bae JA, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, Dorkenwald S, Elabbady L, Halageri A, Jia Z, Jordan C, Kapner D, Kemnitz N, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Schneider-Mizell CM, Silversmith W, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yin W, Yu SC, Yatsenko D, Froudarakis E, Sinz F, Josić K, Rosenbaum R, Seung HS, Collman F, da Costa NM, Reid RC, Walker EY, Pitkow X, Reimer J, Tolias AS. Ding Z, et al. Among authors: fahey pg. Nature. 2025 Apr;640(8058):459-469. doi: 10.1038/s41586-025-08840-3. Epub 2025 Apr 9. Nature. 2025. PMID: 40205211 Free PMC article.
NEURD offers automated proofreading and feature extraction for connectomics.
Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin AB, Patel S, Bae JA, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, Dorkenwald S, Elabbady L, Halageri A, Jia Z, Jordan C, Kapner D, Kemnitz N, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Schneider-Mizell CM, Silversmith W, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yu SC, Yin W, Xenes D, Kitchell LM, Rivlin PK, Rose VA, Bishop CA, Wester B, Froudarakis E, Walker EY, Sinz F, Seung HS, Collman F, da Costa NM, Reid RC, Pitkow X, Tolias AS, Reimer J. Celii B, et al. Among authors: fahey pg. Nature. 2025 Apr;640(8058):487-496. doi: 10.1038/s41586-025-08660-5. Epub 2025 Apr 9. Nature. 2025. PMID: 40205208 Free PMC article.
Bipartite invariance in mouse primary visual cortex.
Ding Z, Tran DT, Ponder K, Cobos E, Ding Z, Fahey PG, Wang E, Muhammad T, Fu J, Cadena SA, Papadopoulos S, Patel S, Franke K, Reimer J, Sinz FH, Ecker AS, Pitkow X, Tolias AS. Ding Z, et al. Among authors: fahey pg. bioRxiv [Preprint]. 2023 Mar 16:2023.03.15.532836. doi: 10.1101/2023.03.15.532836. bioRxiv. 2023. PMID: 36993218 Free PMC article. Preprint.
Investigating the Limits of Neurovascular Coupling.
Denfield GH, Fahey PG, Reimer J, Tolias AS. Denfield GH, et al. Among authors: fahey pg. Neuron. 2016 Sep 7;91(5):954-956. doi: 10.1016/j.neuron.2016.08.026. Neuron. 2016. PMID: 27608758 Free article.
Most discriminative stimuli for functional cell type clustering.
Burg MF, Zenkel T, Vystrčilová M, Oesterle J, Höfling L, Willeke KF, Lause J, Müller S, Fahey PG, Ding Z, Restivo K, Sridhar S, Gollisch T, Berens P, Tolias AS, Euler T, Bethge M, Ecker AS. Burg MF, et al. Among authors: fahey pg. ArXiv [Preprint]. 2024 Mar 14:arXiv:2401.05342v2. ArXiv. 2024. PMID: 38560735 Free PMC article. Preprint.
NEURD offers automated proofreading and feature extraction for connectomics.
Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin A, Patel S, Bae JA, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, Dorkenwald S, Elabbady L, Halageri A, Jia Z, Jordan C, Kapner D, Kemnitz N, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Schneider-Mizell CM, Silversmith W, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yu SC, Yin W, Xenes D, Kitchell LM, Rivlin PK, Rose VA, Bishop CA, Wester B, Froudarakis E, Walker EY, Sinz FH, Seung HS, Collman F, da Costa NM, Reid RC, Pitkow X, Tolias AS, Reimer J. Celii B, et al. Among authors: fahey pg. bioRxiv [Preprint]. 2024 Sep 23:2023.03.14.532674. doi: 10.1101/2023.03.14.532674. bioRxiv. 2024. Update in: Nature. 2025 Apr;640(8058):487-496. doi: 10.1038/s41586-025-08660-5. PMID: 36993282 Free PMC article. Updated. Preprint.
Functional connectomics reveals general wiring rule in mouse visual cortex.
Ding Z, Fahey PG, Papadopoulos S, Wang EY, Celii B, Papadopoulos C, Chang A, Kunin AB, Tran D, Fu J, Ding Z, Patel S, Ntanavara L, Froebe R, Ponder K, Muhammad T, Alexander Bae J, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, Dorkenwald S, Elabbady L, Halageri A, Jia Z, Jordan C, Kapner D, Kemnitz N, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Schneider-Mizell CM, Silversmith W, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yin W, Yu SC, Yatsenko D, Froudarakis E, Sinz F, Josić K, Rosenbaum R, Sebastian Seung H, Collman F, da Costa NM, Clay Reid R, Walker EY, Pitkow X, Reimer J, Tolias AS. Ding Z, et al. Among authors: fahey pg. bioRxiv [Preprint]. 2024 Oct 14:2023.03.13.531369. doi: 10.1101/2023.03.13.531369. bioRxiv. 2024. Update in: Nature. 2025 Apr;640(8058):459-469. doi: 10.1038/s41586-025-08840-3. PMID: 36993398 Free PMC article. Updated. Preprint.
21 results