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Year Number of Results
2009 1
2011 5
2012 6
2013 8
2014 4
2015 6
2016 12
2017 14
2018 12
2019 15
2020 20
2021 35
2022 24
2023 17
2024 12

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179 results

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Page 1
Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus.
Kraemer MUG, Reiner RC Jr, Brady OJ, Messina JP, Gilbert M, Pigott DM, Yi D, Johnson K, Earl L, Marczak LB, Shirude S, Davis Weaver N, Bisanzio D, Perkins TA, Lai S, Lu X, Jones P, Coelho GE, Carvalho RG, Van Bortel W, Marsboom C, Hendrickx G, Schaffner F, Moore CG, Nax HH, Bengtsson L, Wetter E, Tatem AJ, Brownstein JS, Smith DL, Lambrechts L, Cauchemez S, Linard C, Faria NR, Pybus OG, Scott TW, Liu Q, Yu H, Wint GRW, Hay SI, Golding N. Kraemer MUG, et al. Among authors: faria nr. Nat Microbiol. 2019 May;4(5):854-863. doi: 10.1038/s41564-019-0376-y. Epub 2019 Mar 4. Nat Microbiol. 2019. PMID: 30833735 Free PMC article.
Pathophysiology of chikungunya virus infection associated with fatal outcomes.
de Souza WM, Fumagalli MJ, de Lima STS, Parise PL, Carvalho DCM, Hernandez C, de Jesus R, Delafiori J, Candido DS, Carregari VC, Muraro SP, Souza GF, Simões Mello LM, Claro IM, Díaz Y, Kato RB, Trentin LN, Costa CHS, Maximo ACBM, Cavalcante KF, Fiuza TS, Viana VAF, Melo MEL, Ferraz CPM, Silva DB, Duarte LMF, Barbosa PP, Amorim MR, Judice CC, Toledo-Teixeira DA, Ramundo MS, Aguilar PV, Araújo ELL, Costa FTM, Cerqueira-Silva T, Khouri R, Boaventura VS, Figueiredo LTM, Fang R, Moreno B, López-Vergès S, Mello LP, Skaf MS, Catharino RR, Granja F, Martins-de-Souza D, Plante JA, Plante KS, Sabino EC, Diamond MS, Eugenin E, Proença-Módena JL, Faria NR, Weaver SC. de Souza WM, et al. Among authors: faria nr. Cell Host Microbe. 2024 Apr 10;32(4):606-622.e8. doi: 10.1016/j.chom.2024.02.011. Epub 2024 Mar 12. Cell Host Microbe. 2024. PMID: 38479396 Free PMC article.
Rapid viral metagenomics using SMART-9N amplification and nanopore sequencing.
Claro IM, Ramundo MS, Coletti TM, da Silva CAM, Valenca IN, Candido DS, Sales FCS, Manuli ER, de Jesus JG, de Paula A, Felix AC, Andrade PDS, Pinho MC, Souza WM, Amorim MR, Proenca-Modena JL, Kallas EG, Levi JE, Faria NR, Sabino EC, Loman NJ, Quick J. Claro IM, et al. Among authors: faria nr. Wellcome Open Res. 2023 Apr 24;6:241. doi: 10.12688/wellcomeopenres.17170.2. eCollection 2021. Wellcome Open Res. 2023. PMID: 37224315 Free PMC article.
Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance.
Deng X, Achari A, Federman S, Yu G, Somasekar S, Bártolo I, Yagi S, Mbala-Kingebeni P, Kapetshi J, Ahuka-Mundeke S, Muyembe-Tamfum JJ, Ahmed AA, Ganesh V, Tamhankar M, Patterson JL, Ndembi N, Mbanya D, Kaptue L, McArthur C, Muñoz-Medina JE, Gonzalez-Bonilla CR, López S, Arias CF, Arevalo S, Miller S, Stone M, Busch M, Hsieh K, Messenger S, Wadford DA, Rodgers M, Cloherty G, Faria NR, Thézé J, Pybus OG, Neto Z, Morais J, Taveira N, R Hackett J Jr, Chiu CY. Deng X, et al. Among authors: faria nr. Nat Microbiol. 2020 Mar;5(3):443-454. doi: 10.1038/s41564-019-0637-9. Epub 2020 Jan 13. Nat Microbiol. 2020. PMID: 31932713 Free PMC article.
Global disparities in SARS-CoV-2 genomic surveillance.
Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Ho J, Tegally H, Githinji G, Agoti CN, Matkin LE, Whittaker C; Bulgarian SARS-CoV-2 sequencing group; Communicable Diseases Genomics Network (Australia and New Zealand); COVID-19 Impact Project; Danish Covid-19 Genome Consortium; Fiocruz COVID-19 Genomic Surveillance Network; GISAID core curation team; Network for Genomic Surveillance in South Africa (NGS-SA); Swiss SARS-CoV-2 Sequencing Consortium; Howden BP, Sintchenko V, Zuckerman NS, Mor O, Blankenship HM, de Oliveira T, Lin RTP, Siqueira MM, Resende PC, Vasconcelos ATR, Spilki FR, Aguiar RS, Alexiev I, Ivanov IN, Philipova I, Carrington CVF, Sahadeo NSD, Branda B, Gurry C, Maurer-Stroh S, Naidoo D, von Eije KJ, Perkins MD, van Kerkhove M, Hill SC, Sabino EC, Pybus OG, Dye C, Bhatt S, Flaxman S, Suchard MA, Grubaugh ND, Baele G, Faria NR. Brito AF, et al. Among authors: faria nr. Nat Commun. 2022 Nov 16;13(1):7003. doi: 10.1038/s41467-022-33713-y. Nat Commun. 2022. PMID: 36385137 Free PMC article.
Chikungunya: a decade of burden in the Americas.
de Souza WM, Ribeiro GS, de Lima STS, de Jesus R, Moreira FRR, Whittaker C, Sallum MAM, Carrington CVF, Sabino EC, Kitron U, Faria NR, Weaver SC. de Souza WM, et al. Among authors: faria nr. Lancet Reg Health Am. 2024 Jan 8;30:100673. doi: 10.1016/j.lana.2023.100673. eCollection 2024 Feb. Lancet Reg Health Am. 2024. PMID: 38283942 Free PMC article. Review.
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples.
Quick J, Grubaugh ND, Pullan ST, Claro IM, Smith AD, Gangavarapu K, Oliveira G, Robles-Sikisaka R, Rogers TF, Beutler NA, Burton DR, Lewis-Ximenez LL, de Jesus JG, Giovanetti M, Hill SC, Black A, Bedford T, Carroll MW, Nunes M, Alcantara LC Jr, Sabino EC, Baylis SA, Faria NR, Loose M, Simpson JT, Pybus OG, Andersen KG, Loman NJ. Quick J, et al. Among authors: faria nr. Nat Protoc. 2017 Jun;12(6):1261-1276. doi: 10.1038/nprot.2017.066. Epub 2017 May 24. Nat Protoc. 2017. PMID: 28538739 Free PMC article.
Epidemic Spread of SARS-CoV-2 Lineage B.1.1.7 in Brazil.
Moreira FRR, Bonfim DM, Zauli DAG, Silva JP, Lima AB, Malta FSV, Ferreira ACS, Pardini VC, Magalhães WCS, Queiroz DC, Souza RM, Geddes VEV, Costa WC, Moreira RG, Faria NR, Voloch CM, Souza RP, Aguiar RS. Moreira FRR, et al. Among authors: faria nr. Viruses. 2021 May 26;13(6):984. doi: 10.3390/v13060984. Viruses. 2021. PMID: 34073177 Free PMC article.
Reemergence of Oropouche virus between 2023 and 2024 in Brazil.
Scachetti GC, Forato J, Claro IM, Hua X, Salgado BB, Vieira A, Simeoni CL, Barbosa ARC, Rosa IL, de Souza GF, Fernandes LCN, de Sena ACH, Oliveira SC, Singh CML, de Lima ST, de Jesus R, Costa MA, Kato RB, Rocha JF, Santos LC, Rodrigues JT, Cunha MP, Sabino EC, Faria NR, Weaver SC, Romano CM, Lalwani P, Proença-Módena JL, de Souza WM. Scachetti GC, et al. Among authors: faria nr. medRxiv [Preprint]. 2024 Jul 30:2024.07.27.24310296. doi: 10.1101/2024.07.27.24310296. medRxiv. 2024. PMID: 39132482 Free PMC article. Preprint.
179 results