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Page 1
Formation of Chromosomal Domains by Loop Extrusion.
Fudenberg G, Imakaev M, Lu C, Goloborodko A, Abdennur N, Mirny LA. Fudenberg G, et al. Cell Rep. 2016 May 31;15(9):2038-49. doi: 10.1016/j.celrep.2016.04.085. Epub 2016 May 19. Cell Rep. 2016. PMID: 27210764 Free PMC article.
Predicting 3D genome folding from DNA sequence with Akita.
Fudenberg G, Kelley DR, Pollard KS. Fudenberg G, et al. Nat Methods. 2020 Nov;17(11):1111-1117. doi: 10.1038/s41592-020-0958-x. Epub 2020 Oct 12. Nat Methods. 2020. PMID: 33046897 Free PMC article.
Modeling chromosomes: Beyond pretty pictures.
Imakaev MV, Fudenberg G, Mirny LA. Imakaev MV, et al. Among authors: fudenberg g. FEBS Lett. 2015 Oct 7;589(20 Pt A):3031-6. doi: 10.1016/j.febslet.2015.09.004. Epub 2015 Sep 10. FEBS Lett. 2015. PMID: 26364723 Free PMC article. Review.
Embryogenesis without CTCF in flies and vertebrates.
Fudenberg G, Nora EP. Fudenberg G, et al. Nat Struct Mol Biol. 2021 Oct;28(10):774-776. doi: 10.1038/s41594-021-00662-x. Nat Struct Mol Biol. 2021. PMID: 34580493 No abstract available.
Organization of the mitotic chromosome.
Naumova N, Imakaev M, Fudenberg G, Zhan Y, Lajoie BR, Mirny LA, Dekker J. Naumova N, et al. Among authors: fudenberg g. Science. 2013 Nov 22;342(6161):948-53. doi: 10.1126/science.1236083. Epub 2013 Nov 7. Science. 2013. PMID: 24200812 Free PMC article.
Cooltools: Enabling high-resolution Hi-C analysis in Python.
Open2C; Abdennur N, Abraham S, Fudenberg G, Flyamer IM, Galitsyna AA, Goloborodko A, Imakaev M, Oksuz BA, Venev SV, Xiao Y. Open2C, et al. Among authors: fudenberg g. PLoS Comput Biol. 2024 May 6;20(5):e1012067. doi: 10.1371/journal.pcbi.1012067. eCollection 2024 May. PLoS Comput Biol. 2024. PMID: 38709825 Free PMC article.
38 results