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1969 1
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124 results

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Page 1
Ten simple rules for making a software tool workflow-ready.
Brack P, Crowther P, Soiland-Reyes S, Owen S, Lowe D, Williams AR, Groom Q, Dillen M, Coppens F, Grüning B, Eguinoa I, Ewels P, Goble C. Brack P, et al. Among authors: gruning b. PLoS Comput Biol. 2022 Mar 24;18(3):e1009823. doi: 10.1371/journal.pcbi.1009823. eCollection 2022 Mar. PLoS Comput Biol. 2022. PMID: 35324885 Free PMC article. No abstract available.
Recent advances in RNA folding.
Fallmann J, Will S, Engelhardt J, Grüning B, Backofen R, Stadler PF. Fallmann J, et al. Among authors: gruning b. J Biotechnol. 2017 Nov 10;261:97-104. doi: 10.1016/j.jbiotec.2017.07.007. Epub 2017 Jul 8. J Biotechnol. 2017. PMID: 28690134 Free article. Review.
Strategies for analyzing bisulfite sequencing data.
Wreczycka K, Gosdschan A, Yusuf D, Grüning B, Assenov Y, Akalin A. Wreczycka K, et al. Among authors: gruning b. J Biotechnol. 2017 Nov 10;261:105-115. doi: 10.1016/j.jbiotec.2017.08.007. Epub 2017 Aug 16. J Biotechnol. 2017. PMID: 28822795 Free article. Review.
Training Infrastructure as a Service.
Rasche H, Hyde C, Davis J, Gladman S, Coraor N, Bretaudeau A, Cuccuru G, Bacon W, Serrano-Solano B, Hillman-Jackson J, Hiltemann S, Zhou M, Grüning B, Stubbs A. Rasche H, et al. Among authors: gruning b. Gigascience. 2022 Dec 28;12:giad048. doi: 10.1093/gigascience/giad048. Epub 2023 Jul 3. Gigascience. 2022. PMID: 37395629 Free PMC article.
Expanding the Galaxy's reference data.
VijayKrishna N, Joshi J, Coraor N, Hillman-Jackson J, Bouvier D, van den Beek M, Eguinoa I, Coppens F, Davis J, Stolarczyk M, Sheffield NC, Gladman S, Cuccuru G, Grüning B, Soranzo N, Rasche H, Langhorst BW, Bernt M, Fornika D, de Lima Morais DA, Barrette M, van Heusden P, Petrillo M, Puertas-Gallardo A, Patak A, Hotz HR, Blankenberg D. VijayKrishna N, et al. Among authors: gruning b. Bioinform Adv. 2022 Apr 29;2(1):vbac030. doi: 10.1093/bioadv/vbac030. eCollection 2022. Bioinform Adv. 2022. PMID: 35669346 Free PMC article.
The omics discovery REST interface.
Dass G, Vu MT, Xu P, Audain E, Hitz MP, Grüning BA, Hermjakob H, Perez-Riverol Y. Dass G, et al. Among authors: gruning ba. Nucleic Acids Res. 2020 Jul 2;48(W1):W380-W384. doi: 10.1093/nar/gkaa326. Nucleic Acids Res. 2020. PMID: 32374843 Free PMC article.
Transformer-based tool recommendation system in Galaxy.
Kumar A, Grüning B, Backofen R. Kumar A, et al. Among authors: gruning b. BMC Bioinformatics. 2023 Nov 27;24(1):446. doi: 10.1186/s12859-023-05573-w. BMC Bioinformatics. 2023. PMID: 38012574 Free PMC article.
Integrative meta-omics in Galaxy and beyond.
Schiml VC, Delogu F, Kumar P, Kunath B, Batut B, Mehta S, Johnson JE, Grüning B, Pope PB, Jagtap PD, Griffin TJ, Arntzen MØ. Schiml VC, et al. Among authors: gruning b. Environ Microbiome. 2023 Jul 7;18(1):56. doi: 10.1186/s40793-023-00514-9. Environ Microbiome. 2023. PMID: 37420292 Free PMC article.
A proteomics sample metadata representation for multiomics integration and big data analysis.
Dai C, Füllgrabe A, Pfeuffer J, Solovyeva EM, Deng J, Moreno P, Kamatchinathan S, Kundu DJ, George N, Fexova S, Grüning B, Föll MC, Griss J, Vaudel M, Audain E, Locard-Paulet M, Turewicz M, Eisenacher M, Uszkoreit J, Van Den Bossche T, Schwämmle V, Webel H, Schulze S, Bouyssié D, Jayaram S, Duggineni VK, Samaras P, Wilhelm M, Choi M, Wang M, Kohlbacher O, Brazma A, Papatheodorou I, Bandeira N, Deutsch EW, Vizcaíno JA, Bai M, Sachsenberg T, Levitsky LI, Perez-Riverol Y. Dai C, et al. Among authors: gruning b. Nat Commun. 2021 Oct 6;12(1):5854. doi: 10.1038/s41467-021-26111-3. Nat Commun. 2021. PMID: 34615866 Free PMC article. Review.
124 results