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Page 1
Whole-Genome Annotation with BRAKER.
Hoff KJ, Lomsadze A, Borodovsky M, Stanke M. Hoff KJ, et al. Methods Mol Biol. 2019;1962:65-95. doi: 10.1007/978-1-4939-9173-0_5. Methods Mol Biol. 2019. PMID: 31020555 Free PMC article.
Standards recommendations for the Earth BioGenome Project.
Lawniczak MKN, Durbin R, Flicek P, Lindblad-Toh K, Wei X, Archibald JM, Baker WJ, Belov K, Blaxter ML, Marques Bonet T, Childers AK, Coddington JA, Crandall KA, Crawford AJ, Davey RP, Di Palma F, Fang Q, Haerty W, Hall N, Hoff KJ, Howe K, Jarvis ED, Johnson WE, Johnson RN, Kersey PJ, Liu X, Lopez JV, Myers EW, Pettersson OV, Phillippy AM, Poelchau MF, Pruitt KD, Rhie A, Castilla-Rubio JC, Sahu SK, Salmon NA, Soltis PS, Swarbreck D, Thibaud-Nissen F, Wang S, Wegrzyn JL, Zhang G, Zhang H, Lewin HA, Richards S. Lawniczak MKN, et al. Among authors: hoff kj. Proc Natl Acad Sci U S A. 2022 Jan 25;119(4):e2115639118. doi: 10.1073/pnas.2115639118. Proc Natl Acad Sci U S A. 2022. PMID: 35042802 Free PMC article.
TSEBRA: transcript selector for BRAKER.
Gabriel L, Hoff KJ, Brůna T, Borodovsky M, Stanke M. Gabriel L, et al. Among authors: hoff kj. BMC Bioinformatics. 2021 Nov 25;22(1):566. doi: 10.1186/s12859-021-04482-0. BMC Bioinformatics. 2021. PMID: 34823473 Free PMC article.
Genomic analysis of the international high-risk clonal lineage Klebsiella pneumoniae sequence type 395.
Shaidullina ER, Schwabe M, Rohde T, Shapovalova VV, Dyachkova MS, Matsvay AD, Savochkina YA, Shelenkov AA, Mikhaylova YV, Sydow K, Lebreton F, Idelevich EA, Heiden SE, Becker K, Kozlov RS, Shipulin GA, Akimkin VG, Lalk M, Guenther S, Zautner AE, Bohnert JA, Mardanova AM, Bouganim R, Marchaim D, Hoff KJ, Schaufler K, Edelstein MV. Shaidullina ER, et al. Among authors: hoff kj. Genome Med. 2023 Feb 13;15(1):9. doi: 10.1186/s13073-023-01159-6. Genome Med. 2023. PMID: 36782220 Free PMC article.
GALBA: Genome Annotation with Miniprot and AUGUSTUS.
Brůna T, Li H, Guhlin J, Honsel D, Herbold S, Stanke M, Nenasheva N, Ebel M, Gabriel L, Hoff KJ. Brůna T, et al. Among authors: hoff kj. bioRxiv [Preprint]. 2023 Apr 10:2023.04.10.536199. doi: 10.1101/2023.04.10.536199. bioRxiv. 2023. PMID: 37090650 Free PMC article. Updated. Preprint.
Galba: genome annotation with miniprot and AUGUSTUS.
Brůna T, Li H, Guhlin J, Honsel D, Herbold S, Stanke M, Nenasheva N, Ebel M, Gabriel L, Hoff KJ. Brůna T, et al. Among authors: hoff kj. BMC Bioinformatics. 2023 Aug 31;24(1):327. doi: 10.1186/s12859-023-05449-z. BMC Bioinformatics. 2023. PMID: 37653395 Free PMC article.
42 results