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40 results

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Page 1
Pan-Genome Storage and Analysis Techniques.
Zekic T, Holley G, Stoye J. Zekic T, et al. Among authors: holley g. Methods Mol Biol. 2018;1704:29-53. doi: 10.1007/978-1-4939-7463-4_2. Methods Mol Biol. 2018. PMID: 29277862 Review.
A comparison of methods for detecting DNA methylation from long-read sequencing of human genomes.
Sigurpalsdottir BD, Stefansson OA, Holley G, Beyter D, Zink F, Hardarson MÞ, Sverrisson SÞ, Kristinsdottir N, Magnusdottir DN, Magnusson OÞ, Gudbjartsson DF, Halldorsson BV, Stefansson K. Sigurpalsdottir BD, et al. Among authors: holley g. Genome Biol. 2024 Mar 11;25(1):69. doi: 10.1186/s13059-024-03207-9. Genome Biol. 2024. PMID: 38468278 Free PMC article.
The sequences of 150,119 genomes in the UK Biobank.
Halldorsson BV, Eggertsson HP, Moore KHS, Hauswedell H, Eiriksson O, Ulfarsson MO, Palsson G, Hardarson MT, Oddsson A, Jensson BO, Kristmundsdottir S, Sigurpalsdottir BD, Stefansson OA, Beyter D, Holley G, Tragante V, Gylfason A, Olason PI, Zink F, Asgeirsdottir M, Sverrisson ST, Sigurdsson B, Gudjonsson SA, Sigurdsson GT, Halldorsson GH, Sveinbjornsson G, Norland K, Styrkarsdottir U, Magnusdottir DN, Snorradottir S, Kristinsson K, Sobech E, Jonsson H, Geirsson AJ, Olafsson I, Jonsson P, Pedersen OB, Erikstrup C, Brunak S, Ostrowski SR; DBDS Genetic Consortium; Thorleifsson G, Jonsson F, Melsted P, Jonsdottir I, Rafnar T, Holm H, Stefansson H, Saemundsdottir J, Gudbjartsson DF, Magnusson OT, Masson G, Thorsteinsdottir U, Helgason A, Jonsson H, Sulem P, Stefansson K. Halldorsson BV, et al. Among authors: holley g. Nature. 2022 Jul;607(7920):732-740. doi: 10.1038/s41586-022-04965-x. Epub 2022 Jul 20. Nature. 2022. PMID: 35859178 Free PMC article.
Sequence variants affecting the genome-wide rate of germline microsatellite mutations.
Kristmundsdottir S, Jonsson H, Hardarson MT, Palsson G, Beyter D, Eggertsson HP, Gylfason A, Sveinbjornsson G, Holley G, Stefansson OA, Halldorsson GH, Olafsson S, Arnadottir GA, Olason PI, Eiriksson O, Masson G, Thorsteinsdottir U, Rafnar T, Sulem P, Helgason A, Gudbjartsson DF, Halldorsson BV, Stefansson K. Kristmundsdottir S, et al. Among authors: holley g. Nat Commun. 2023 Jun 29;14(1):3855. doi: 10.1038/s41467-023-39547-6. Nat Commun. 2023. PMID: 37386006 Free PMC article.
kallisto, bustools, and kb-python for quantifying bulk, single-cell, and single-nucleus RNA-seq.
Sullivan DK, Min KHJ, Hjörleifsson KE, Luebbert L, Holley G, Moses L, Gustafsson J, Bray NL, Pimentel H, Booeshaghi AS, Melsted P, Pachter L. Sullivan DK, et al. Among authors: holley g. bioRxiv [Preprint]. 2024 Jan 23:2023.11.21.568164. doi: 10.1101/2023.11.21.568164. bioRxiv. 2024. Update in: Nat Protoc. 2024 Oct 10. doi: 10.1038/s41596-024-01057-0. PMID: 38045414 Free PMC article. Updated. Preprint.
40 results