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Year Number of Results
2014 1
2018 5
2019 8
2020 4
2021 4
2022 11
2023 3

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Page 1
Democratizing knowledge representation with BioCypher.
Lobentanzer S, Aloy P, Baumbach J, Bohar B, Carey VJ, Charoentong P, Danhauser K, Doğan T, Dreo J, Dunham I, Farr E, Fernandez-Torras A, Gyori BM, Hartung M, Hoyt CT, Klein C, Korcsmaros T, Maier A, Mann M, Ochoa D, Pareja-Lorente E, Popp F, Preusse M, Probul N, Schwikowski B, Sen B, Strauss MT, Turei D, Ulusoy E, Waltemath D, Wodke JAH, Saez-Rodriguez J. Lobentanzer S, et al. Among authors: hoyt ct. Nat Biotechnol. 2023 Aug;41(8):1056-1059. doi: 10.1038/s41587-023-01848-y. Nat Biotechnol. 2023. PMID: 37337100 No abstract available.
PyBioPAX: biological pathway exchange in Python.
Gyori BM, Hoyt CT. Gyori BM, et al. Among authors: hoyt ct. J Open Source Softw. 2022;7(71):4136. doi: 10.21105/joss.04136. Epub 2022 Mar 11. J Open Source Softw. 2022. PMID: 36071952 Free PMC article. No abstract available.
The role of metadata in reproducible computational research.
Leipzig J, Nüst D, Hoyt CT, Ram K, Greenberg J. Leipzig J, et al. Among authors: hoyt ct. Patterns (N Y). 2021 Sep 10;2(9):100322. doi: 10.1016/j.patter.2021.100322. eCollection 2021 Sep 10. Patterns (N Y). 2021. PMID: 34553169 Free PMC article. Review.
Challenges of Integrative Disease Modeling in Alzheimer's Disease.
Golriz Khatami S, Robinson C, Birkenbihl C, Domingo-Fernández D, Hoyt CT, Hofmann-Apitius M. Golriz Khatami S, et al. Among authors: hoyt ct. Front Mol Biosci. 2020 Jan 14;6:158. doi: 10.3389/fmolb.2019.00158. eCollection 2019. Front Mol Biosci. 2020. PMID: 31993440 Free PMC article. Review.
Unifying the identification of biomedical entities with the Bioregistry.
Hoyt CT, Balk M, Callahan TJ, Domingo-Fernández D, Haendel MA, Hegde HB, Himmelstein DS, Karis K, Kunze J, Lubiana T, Matentzoglu N, McMurry J, Moxon S, Mungall CJ, Rutz A, Unni DR, Willighagen E, Winston D, Gyori BM. Hoyt CT, et al. Sci Data. 2022 Nov 19;9(1):714. doi: 10.1038/s41597-022-01807-3. Sci Data. 2022. PMID: 36402838 Free PMC article.
A Simple Standard for Sharing Ontological Mappings (SSSOM).
Matentzoglu N, Balhoff JP, Bello SM, Bizon C, Brush M, Callahan TJ, Chute CG, Duncan WD, Evelo CT, Gabriel D, Graybeal J, Gray A, Gyori BM, Haendel M, Harmse H, Harris NL, Harrow I, Hegde HB, Hoyt AL, Hoyt CT, Jiao D, Jiménez-Ruiz E, Jupp S, Kim H, Koehler S, Liener T, Long Q, Malone J, McLaughlin JA, McMurry JA, Moxon S, Munoz-Torres MC, Osumi-Sutherland D, Overton JA, Peters B, Putman T, Queralt-Rosinach N, Shefchek K, Solbrig H, Thessen A, Tudorache T, Vasilevsky N, Wagner AH, Mungall CJ. Matentzoglu N, et al. Among authors: hoyt ct. Database (Oxford). 2022 May 25;2022:baac035. doi: 10.1093/database/baac035. Database (Oxford). 2022. PMID: 35616100 Free PMC article.
PathMe: merging and exploring mechanistic pathway knowledge.
Domingo-Fernández D, Mubeen S, Marín-Llaó J, Hoyt CT, Hofmann-Apitius M. Domingo-Fernández D, et al. Among authors: hoyt ct. BMC Bioinformatics. 2019 May 15;20(1):243. doi: 10.1186/s12859-019-2863-9. BMC Bioinformatics. 2019. PMID: 31092193 Free PMC article.
34 results