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The injury response to DNA damage in live tumor cells promotes antitumor immunity.

Sriram G, Milling LE, Chen JK, Kong YW, Joughin BA, Abraham W, Swartwout S, Handly ED, Irvine DJ, Yaffe MB. Sriram G, et al. Among authors: joughin ba. Sci Signal. 2021 Oct 19;14(705):eabc4764. doi: 10.1126/scisignal.abc4764. Epub 2021 Oct 19. Sci Signal. 2021. PMID: 34665642 Free PMC article.

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Tissue-Specific Oncogenic Activity of KRAS^A146T.

Poulin EJ, Bera AK, Lu J, Lin YJ, Strasser SD, Paulo JA, Huang TQ, Morales C, Yan W, Cook J, Nowak JA, Brubaker DK, Joughin BA, Johnson CW, DeStefanis RA, Ghazi PC, Gondi S, Wales TE, Iacob RE, Bogdanova L, Gierut JJ, Li Y, Engen JR, Perez-Mancera PA, Braun BS, Gygi SP, Lauffenburger DA, Westover KD, Haigis KM. Poulin EJ, et al. Among authors: joughin ba. Cancer Discov. 2019 Jun;9(6):738-755. doi: 10.1158/2159-8290.CD-18-1220. Epub 2019 Apr 5. Cancer Discov. 2019. PMID: 30952657 Free PMC article.

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Phosphoproteomics identifies microglial Siglec-F inflammatory response during neurodegeneration.

Morshed N, Ralvenius WT, Nott A, Watson LA, Rodriguez FH, Akay LA, Joughin BA, Pao PC, Penney J, LaRocque L, Mastroeni D, Tsai LH, White FM. Morshed N, et al. Among authors: joughin ba. Mol Syst Biol. 2020 Dec;16(12):e9819. doi: 10.15252/msb.20209819. Mol Syst Biol. 2020. PMID: 33289969 Free PMC article.

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Systems Approaches to Cancer Biology.

Archer TC, Fertig EJ, Gosline SJ, Hafner M, Hughes SK, Joughin BA, Meyer AS, Piccolo SR, Shajahan-Haq AN. Archer TC, et al. Among authors: joughin ba. Cancer Res. 2016 Dec 1;76(23):6774-6777. doi: 10.1158/0008-5472.CAN-16-1580. Epub 2016 Nov 18. Cancer Res. 2016. PMID: 27864348 Free PMC article.

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VISAGE Reveals a Targetable Mitotic Spindle Vulnerability in Cancer Cells.

Patterson JC, Joughin BA, Prota AE, Mühlethaler T, Jonas OH, Whitman MA, Varmeh S, Chen S, Balk SP, Steinmetz MO, Lauffenburger DA, Yaffe MB. Patterson JC, et al. Among authors: joughin ba. Cell Syst. 2019 Jul 24;9(1):74-92.e8. doi: 10.1016/j.cels.2019.05.009. Epub 2019 Jul 10. Cell Syst. 2019. PMID: 31302152 Free PMC article.

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Substrate-based kinase activity inference identifies MK2 as driver of colitis.

Strasser SD, Ghazi PC, Starchenko A, Boukhali M, Edwards A, Suarez-Lopez L, Lyons J, Changelian PS, Monahan JB, Jacobsen J, Brubaker DK, Joughin BA, Yaffe MB, Haas W, Lauffenburger DA, Haigis KM. Strasser SD, et al. Among authors: joughin ba. Integr Biol (Camb). 2019 Nov 26;11(7):301-314. doi: 10.1093/intbio/zyz025. Integr Biol (Camb). 2019. PMID: 31617572 Free PMC article.

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Proteogenomic Network Analysis of Context-Specific KRAS Signaling in Mouse-to-Human Cross-Species Translation.

Brubaker DK, Paulo JA, Sheth S, Poulin EJ, Popow O, Joughin BA, Strasser SD, Starchenko A, Gygi SP, Lauffenburger DA, Haigis KM. Brubaker DK, et al. Among authors: joughin ba. Cell Syst. 2019 Sep 25;9(3):258-270.e6. doi: 10.1016/j.cels.2019.07.006. Epub 2019 Sep 11. Cell Syst. 2019. PMID: 31521603 Free PMC article.

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Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data.

Holland CH, Tanevski J, Perales-Patón J, Gleixner J, Kumar MP, Mereu E, Joughin BA, Stegle O, Lauffenburger DA, Heyn H, Szalai B, Saez-Rodriguez J. Holland CH, et al. Among authors: joughin ba. Genome Biol. 2020 Feb 12;21(1):36. doi: 10.1186/s13059-020-1949-z. Genome Biol. 2020. PMID: 32051003 Free PMC article.

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Transite: A Computational Motif-Based Analysis Platform That Identifies RNA-Binding Proteins Modulating Changes in Gene Expression.

Krismer K, Bird MA, Varmeh S, Handly ED, Gattinger A, Bernwinkler T, Anderson DA, Heinzel A, Joughin BA, Kong YW, Cannell IG, Yaffe MB. Krismer K, et al. Among authors: joughin ba. Cell Rep. 2020 Aug 25;32(8):108064. doi: 10.1016/j.celrep.2020.108064. Cell Rep. 2020. PMID: 32846122 Free PMC article.

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Multiplexed relative and absolute quantitative immunopeptidomics reveals MHC I repertoire alterations induced by CDK4/6 inhibition.

Stopfer LE, Mesfin JM, Joughin BA, Lauffenburger DA, White FM. Stopfer LE, et al. Among authors: joughin ba. Nat Commun. 2020 Jun 2;11(1):2760. doi: 10.1038/s41467-020-16588-9. Nat Commun. 2020. PMID: 32488085 Free PMC article.

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