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48 results

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Page 1
The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design.
Alford RF, Leaver-Fay A, Jeliazkov JR, O'Meara MJ, DiMaio FP, Park H, Shapovalov MV, Renfrew PD, Mulligan VK, Kappel K, Labonte JW, Pacella MS, Bonneau R, Bradley P, Dunbrack RL Jr, Das R, Baker D, Kuhlman B, Kortemme T, Gray JJ. Alford RF, et al. Among authors: kappel k. J Chem Theory Comput. 2017 Jun 13;13(6):3031-3048. doi: 10.1021/acs.jctc.7b00125. Epub 2017 May 12. J Chem Theory Comput. 2017. PMID: 28430426 Free PMC article.
Macromolecular modeling and design in Rosetta: recent methods and frameworks.
Leman JK, Weitzner BD, Lewis SM, Adolf-Bryfogle J, Alam N, Alford RF, Aprahamian M, Baker D, Barlow KA, Barth P, Basanta B, Bender BJ, Blacklock K, Bonet J, Boyken SE, Bradley P, Bystroff C, Conway P, Cooper S, Correia BE, Coventry B, Das R, De Jong RM, DiMaio F, Dsilva L, Dunbrack R, Ford AS, Frenz B, Fu DY, Geniesse C, Goldschmidt L, Gowthaman R, Gray JJ, Gront D, Guffy S, Horowitz S, Huang PS, Huber T, Jacobs TM, Jeliazkov JR, Johnson DK, Kappel K, Karanicolas J, Khakzad H, Khar KR, Khare SD, Khatib F, Khramushin A, King IC, Kleffner R, Koepnick B, Kortemme T, Kuenze G, Kuhlman B, Kuroda D, Labonte JW, Lai JK, Lapidoth G, Leaver-Fay A, Lindert S, Linsky T, London N, Lubin JH, Lyskov S, Maguire J, Malmström L, Marcos E, Marcu O, Marze NA, Meiler J, Moretti R, Mulligan VK, Nerli S, Norn C, Ó'Conchúir S, Ollikainen N, Ovchinnikov S, Pacella MS, Pan X, Park H, Pavlovicz RE, Pethe M, Pierce BG, Pilla KB, Raveh B, Renfrew PD, Burman SSR, Rubenstein A, Sauer MF, Scheck A, Schief W, Schueler-Furman O, Sedan Y, Sevy AM, Sgourakis NG, Shi L, Siegel JB, Silva DA, Smith S, Song Y, Stein A, Szegedy M, Teets FD, Thyme SB, Wang RY, Watkins A, Zimmerman L, Bonneau R. Leman JK, et al. Among authors: kappel k. Nat Methods. 2020 Jul;17(7):665-680. doi: 10.1038/s41592-020-0848-2. Epub 2020 Jun 1. Nat Methods. 2020. PMID: 32483333 Free PMC article. Review.
Are we ready for back-to-nature crop breeding?
Palmgren MG, Edenbrandt AK, Vedel SE, Andersen MM, Landes X, Østerberg JT, Falhof J, Olsen LI, Christensen SB, Sandøe P, Gamborg C, Kappel K, Thorsen BJ, Pagh P. Palmgren MG, et al. Among authors: kappel k. Trends Plant Sci. 2015 Mar;20(3):155-64. doi: 10.1016/j.tplants.2014.11.003. Epub 2014 Dec 16. Trends Plant Sci. 2015. PMID: 25529373 Review.
Feasibility of new breeding techniques for organic farming.
Andersen MM, Landes X, Xiang W, Anyshchenko A, Falhof J, Østerberg JT, Olsen LI, Edenbrandt AK, Vedel SE, Thorsen BJ, Sandøe P, Gamborg C, Kappel K, Palmgren MG. Andersen MM, et al. Among authors: kappel k. Trends Plant Sci. 2015 Jul;20(7):426-34. doi: 10.1016/j.tplants.2015.04.011. Epub 2015 May 28. Trends Plant Sci. 2015. PMID: 26027462 Review.
Accelerating the Domestication of New Crops: Feasibility and Approaches.
Østerberg JT, Xiang W, Olsen LI, Edenbrandt AK, Vedel SE, Christiansen A, Landes X, Andersen MM, Pagh P, Sandøe P, Nielsen J, Christensen SB, Thorsen BJ, Kappel K, Gamborg C, Palmgren M. Østerberg JT, et al. Among authors: kappel k. Trends Plant Sci. 2017 May;22(5):373-384. doi: 10.1016/j.tplants.2017.01.004. Epub 2017 Mar 2. Trends Plant Sci. 2017. PMID: 28262427 Review.
Structure of the OMEGA nickase IsrB in complex with ωRNA and target DNA.
Hirano S, Kappel K, Altae-Tran H, Faure G, Wilkinson ME, Kannan S, Demircioglu FE, Yan R, Shiozaki M, Yu Z, Makarova KS, Koonin EV, Macrae RK, Zhang F. Hirano S, et al. Among authors: kappel k. Nature. 2022 Oct;610(7932):575-581. doi: 10.1038/s41586-022-05324-6. Epub 2022 Oct 12. Nature. 2022. PMID: 36224386 Free PMC article.
DAPTEV: Deep aptamer evolutionary modelling for COVID-19 drug design.
Andress C, Kappel K, Villena ME, Cuperlovic-Culf M, Yan H, Li Y. Andress C, et al. Among authors: kappel k. PLoS Comput Biol. 2023 Jul 5;19(7):e1010774. doi: 10.1371/journal.pcbi.1010774. eCollection 2023 Jul. PLoS Comput Biol. 2023. PMID: 37406007 Free PMC article.
48 results