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1995 2
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2020 4
2021 7
2022 3
2023 5
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Page 1
Macromolecular modeling and design in Rosetta: recent methods and frameworks.
Leman JK, Weitzner BD, Lewis SM, Adolf-Bryfogle J, Alam N, Alford RF, Aprahamian M, Baker D, Barlow KA, Barth P, Basanta B, Bender BJ, Blacklock K, Bonet J, Boyken SE, Bradley P, Bystroff C, Conway P, Cooper S, Correia BE, Coventry B, Das R, De Jong RM, DiMaio F, Dsilva L, Dunbrack R, Ford AS, Frenz B, Fu DY, Geniesse C, Goldschmidt L, Gowthaman R, Gray JJ, Gront D, Guffy S, Horowitz S, Huang PS, Huber T, Jacobs TM, Jeliazkov JR, Johnson DK, Kappel K, Karanicolas J, Khakzad H, Khar KR, Khare SD, Khatib F, Khramushin A, King IC, Kleffner R, Koepnick B, Kortemme T, Kuenze G, Kuhlman B, Kuroda D, Labonte JW, Lai JK, Lapidoth G, Leaver-Fay A, Lindert S, Linsky T, London N, Lubin JH, Lyskov S, Maguire J, Malmström L, Marcos E, Marcu O, Marze NA, Meiler J, Moretti R, Mulligan VK, Nerli S, Norn C, Ó'Conchúir S, Ollikainen N, Ovchinnikov S, Pacella MS, Pan X, Park H, Pavlovicz RE, Pethe M, Pierce BG, Pilla KB, Raveh B, Renfrew PD, Burman SSR, Rubenstein A, Sauer MF, Scheck A, Schief W, Schueler-Furman O, Sedan Y, Sevy AM, Sgourakis NG, Shi L, Siegel JB, Silva DA, Smith S, Song Y, Stein A, Szegedy M, Teets FD, Thyme SB, Wang RY, Watkins A, Zimmerman L, Bonneau R. Leman JK, et al. Among authors: khakzad h. Nat Methods. 2020 Jul;17(7):665-680. doi: 10.1038/s41592-020-0848-2. Epub 2020 Jun 1. Nat Methods. 2020. PMID: 32483333 Free PMC article. Review.
A new age in protein design empowered by deep learning.
Khakzad H, Igashov I, Schneuing A, Goverde C, Bronstein M, Correia B. Khakzad H, et al. Cell Syst. 2023 Nov 15;14(11):925-939. doi: 10.1016/j.cels.2023.10.006. Cell Syst. 2023. PMID: 37972559 Review.
Shigella IpaA mediates actin bundling through diffusible vinculin oligomers with activation imprint.
Valencia-Gallardo C, Aguilar-Salvador DI, Khakzad H, Cocom-Chan B, Bou-Nader C, Velours C, Zarrouk Y, Le Clainche C, Malosse C, Lima DB, Quenech'Du N, Mazhar B, Essid S, Fontecave M, Asnacios A, Chamot-Rooke J, Malmström L, Tran Van Nhieu G. Valencia-Gallardo C, et al. Among authors: khakzad h. Cell Rep. 2023 Apr 25;42(4):112405. doi: 10.1016/j.celrep.2023.112405. Epub 2023 Apr 17. Cell Rep. 2023. PMID: 37071535 Free article.
Invasive Streptococcal Infection Can Lead to the Generation of Cross-Strain Opsonic Antibodies.
de Neergaard T, Bläckberg A, Ivarsson H, Thomasson S, Kumra Ahnlide V, Chowdhury S, Khakzad H, Bahnan W, Malmström J, Rasmussen M, Nordenfelt P. de Neergaard T, et al. Among authors: khakzad h. Microbiol Spectr. 2022 Dec 21;10(6):e0248622. doi: 10.1128/spectrum.02486-22. Epub 2022 Oct 31. Microbiol Spectr. 2022. PMID: 36314947 Free PMC article.
A human monoclonal antibody bivalently binding two different epitopes in streptococcal M protein mediates immune function.
Bahnan W, Happonen L, Khakzad H, Kumra Ahnlide V, de Neergaard T, Wrighton S, André O, Bratanis E, Tang D, Hellmark T, Björck L, Shannon O, Malmström L, Malmström J, Nordenfelt P. Bahnan W, et al. Among authors: khakzad h. EMBO Mol Med. 2023 Feb 8;15(2):e16208. doi: 10.15252/emmm.202216208. Epub 2022 Dec 12. EMBO Mol Med. 2023. PMID: 36507602 Free PMC article.
23 results