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Unified rational protein engineering with sequence-based deep representation learning.
Nat Methods. 2019 Dec;16(12):1315-1322. doi: 10.1038/s41592-019-0598-1. Epub 2019 Oct 21.
Nat Methods. 2019.
PMID: 31636460
Free PMC article.
Low-N protein engineering with data-efficient deep learning.
Biswas S, Khimulya G, Alley EC, Esvelt KM, Church GM.
Biswas S, et al. Among authors: khimulya g.
Nat Methods. 2021 Apr;18(4):389-396. doi: 10.1038/s41592-021-01100-y. Epub 2021 Apr 7.
Nat Methods. 2021.
PMID: 33828272
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Negative selection maintains transcription factor binding motifs in human cancer.
Vorontsov IE, Khimulya G, Lukianova EN, Nikolaeva DD, Eliseeva IA, Kulakovskiy IV, Makeev VJ.
Vorontsov IE, et al. Among authors: khimulya g.
BMC Genomics. 2016 Jun 23;17 Suppl 2(Suppl 2):395. doi: 10.1186/s12864-016-2728-9.
BMC Genomics. 2016.
PMID: 27356864
Free PMC article.
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EpiFactors: a comprehensive database of human epigenetic factors and complexes.
Medvedeva YA, Lennartsson A, Ehsani R, Kulakovskiy IV, Vorontsov IE, Panahandeh P, Khimulya G, Kasukawa T; FANTOM Consortium; Drabløs F.
Medvedeva YA, et al. Among authors: khimulya g.
Database (Oxford). 2015 Jul 7;2015:bav067. doi: 10.1093/database/bav067. Print 2015.
Database (Oxford). 2015.
PMID: 26153137
Free PMC article.
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