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Year Number of Results
2002 1
2004 1
2005 3
2006 4
2007 9
2008 5
2009 6
2010 6
2011 7
2012 11
2013 8
2014 10
2015 6
2016 7
2017 5
2018 11
2019 5
2020 10
2021 13
2022 15
2023 8
2024 3

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145 results

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Page 1
RASCL: Rapid Assessment Of SARS-CoV-2 Clades Through Molecular Sequence Analysis.
Lucaci AG, Zehr JD, Shank SD, Bouvier D, Mei H, Nekrutenko A, Martin DP, Kosakovsky Pond SL. Lucaci AG, et al. Among authors: kosakovsky pond sl. bioRxiv [Preprint]. 2022 Jan 18:2022.01.15.476448. doi: 10.1101/2022.01.15.476448. bioRxiv. 2022. PMID: 35075458 Free PMC article. Updated. Preprint.
Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa.
Viana R, Moyo S, Amoako DG, Tegally H, Scheepers C, Althaus CL, Anyaneji UJ, Bester PA, Boni MF, Chand M, Choga WT, Colquhoun R, Davids M, Deforche K, Doolabh D, du Plessis L, Engelbrecht S, Everatt J, Giandhari J, Giovanetti M, Hardie D, Hill V, Hsiao NY, Iranzadeh A, Ismail A, Joseph C, Joseph R, Koopile L, Kosakovsky Pond SL, Kraemer MUG, Kuate-Lere L, Laguda-Akingba O, Lesetedi-Mafoko O, Lessells RJ, Lockman S, Lucaci AG, Maharaj A, Mahlangu B, Maponga T, Mahlakwane K, Makatini Z, Marais G, Maruapula D, Masupu K, Matshaba M, Mayaphi S, Mbhele N, Mbulawa MB, Mendes A, Mlisana K, Mnguni A, Mohale T, Moir M, Moruisi K, Mosepele M, Motsatsi G, Motswaledi MS, Mphoyakgosi T, Msomi N, Mwangi PN, Naidoo Y, Ntuli N, Nyaga M, Olubayo L, Pillay S, Radibe B, Ramphal Y, Ramphal U, San JE, Scott L, Shapiro R, Singh L, Smith-Lawrence P, Stevens W, Strydom A, Subramoney K, Tebeila N, Tshiabuila D, Tsui J, van Wyk S, Weaver S, Wibmer CK, Wilkinson E, Wolter N, Zarebski AE, Zuze B, Goedhals D, Preiser W, Treurnicht F, Venter M, Williamson C, Pybus OG, Bhiman J, Glass A, Martin DP, Rambaut A, Gaseitsiwe S, von Gottberg A, de Oliveira T. Viana R, et al. Among authors: kosakovsky pond sl. Nature. 2022 Mar;603(7902):679-686. doi: 10.1038/s41586-022-04411-y. Epub 2022 Jan 7. Nature. 2022. PMID: 35042229 Free PMC article.
Anti-COVID drug accelerates viral evolution.
Kosakovsky Pond SL, Martin D. Kosakovsky Pond SL, et al. Nature. 2023 Nov;623(7987):486-487. doi: 10.1038/d41586-023-03248-3. Nature. 2023. PMID: 37875683 No abstract available.
Conserved recombination patterns across coronavirus subgenera.
de Klerk A, Swanepoel P, Lourens R, Zondo M, Abodunran I, Lytras S, MacLean OA, Robertson D, Kosakovsky Pond SL, Zehr JD, Kumar V, Stanhope MJ, Harkins G, Murrell B, Martin DP. de Klerk A, et al. Among authors: kosakovsky pond sl. Virus Evol. 2022 Jun 14;8(2):veac054. doi: 10.1093/ve/veac054. eCollection 2022. Virus Evol. 2022. PMID: 35814334 Free PMC article.
Recommendations on data sharing in HIV drug resistance research.
Inzaule SC, Siedner MJ, Little SJ, Avila-Rios S, Ayitewala A, Bosch RJ, Calvez V, Ceccherini-Silberstein F, Charpentier C, Descamps D, Eshleman SH, Fokam J, Frenkel LM, Gupta RK, Ioannidis JPA, Kaleebu P, Kantor R, Kassaye SG, Kosakovsky Pond SL, Kouamou V, Kouyos RD, Kuritzkes DR, Lessells R, Marcelin AG, Mbuagbaw L, Minalga B, Ndembi N, Neher RA, Paredes R, Pillay D, Raizes EG, Rhee SY, Richman DD, Ruxrungtham K, Sabeti PC, Schapiro JM, Sirivichayakul S, Steegen K, Sugiura W, van Zyl GU, Vandamme AM, Wensing AMJ, Wertheim JO, Gunthard HF, Jordan MR, Shafer RW. Inzaule SC, et al. Among authors: kosakovsky pond sl. PLoS Med. 2023 Sep 22;20(9):e1004293. doi: 10.1371/journal.pmed.1004293. eCollection 2023 Sep. PLoS Med. 2023. PMID: 37738247 Free PMC article.
Statistics and truth in phylogenomics.
Kumar S, Filipski AJ, Battistuzzi FU, Kosakovsky Pond SL, Tamura K. Kumar S, et al. Among authors: kosakovsky pond sl. Mol Biol Evol. 2012 Feb;29(2):457-72. doi: 10.1093/molbev/msr202. Epub 2011 Aug 26. Mol Biol Evol. 2012. PMID: 21873298 Free PMC article. Review.
The biological and clinical significance of emerging SARS-CoV-2 variants.
Tao K, Tzou PL, Nouhin J, Gupta RK, de Oliveira T, Kosakovsky Pond SL, Fera D, Shafer RW. Tao K, et al. Among authors: kosakovsky pond sl. Nat Rev Genet. 2021 Dec;22(12):757-773. doi: 10.1038/s41576-021-00408-x. Epub 2021 Sep 17. Nat Rev Genet. 2021. PMID: 34535792 Free PMC article. Review.
The genomic evolutionary dynamics and global circulation patterns of respiratory syncytial virus.
Langedijk AC, Vrancken B, Lebbink RJ, Wilkins D, Kelly EJ, Baraldi E, Mascareñas de Los Santos AH, Danilenko DM, Choi EH, Palomino MA, Chi H, Keller C, Cohen R, Papenburg J, Pernica J, Greenough A, Richmond P, Martinón-Torres F, Heikkinen T, Stein RT, Hosoya M, Nunes MC, Verwey C, Evers A, Kragten-Tabatabaie L, Suchard MA, Kosakovsky Pond SL, Poletto C, Colizza V, Lemey P, Bont LJ; INFORM-RSV Study Group. Langedijk AC, et al. Among authors: kosakovsky pond sl. Nat Commun. 2024 Apr 10;15(1):3083. doi: 10.1038/s41467-024-47118-6. Nat Commun. 2024. PMID: 38600104 Free PMC article.
The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes.
Makova KD, Pickett BD, Harris RS, Hartley GA, Cechova M, Pal K, Nurk S, Yoo D, Li Q, Hebbar P, McGrath BC, Antonacci F, Aubel M, Biddanda A, Borchers M, Bomberg E, Bouffard GG, Brooks SY, Carbone L, Carrel L, Carroll A, Chang PC, Chin CS, Cook DE, Craig SJC, de Gennaro L, Diekhans M, Dutra A, Garcia GH, Grady PGS, Green RE, Haddad D, Hallast P, Harvey WT, Hickey G, Hillis DA, Hoyt SJ, Jeong H, Kamali K, Kosakovsky Pond SL, LaPolice TM, Lee C, Lewis AP, Loh YE, Masterson P, McCoy RC, Medvedev P, Miga KH, Munson KM, Pak E, Paten B, Pinto BJ, Potapova T, Rhie A, Rocha JL, Ryabov F, Ryder OA, Sacco S, Shafin K, Shepelev VA, Slon V, Solar SJ, Storer JM, Sudmant PH, Sweetalana, Sweeten A, Tassia MG, Thibaud-Nissen F, Ventura M, Wilson MA, Young AC, Zeng H, Zhang X, Szpiech ZA, Huber CD, Gerton JL, Yi SV, Schatz MC, Alexandrov IA, Koren S, O'Neill RJ, Eichler E, Phillippy AM. Makova KD, et al. Among authors: kosakovsky pond sl. bioRxiv [Preprint]. 2023 Dec 1:2023.11.30.569198. doi: 10.1101/2023.11.30.569198. bioRxiv. 2023. PMID: 38077089 Free PMC article. Preprint.
Molecular Evolution of Human Norovirus GII.2 Clusters.
Li X, Liu H, Rife Magalis B, Kosakovsky Pond SL, Volz EM. Li X, et al. Among authors: kosakovsky pond sl. Front Microbiol. 2021 Mar 22;12:655567. doi: 10.3389/fmicb.2021.655567. eCollection 2021. Front Microbiol. 2021. PMID: 33828543 Free PMC article.
145 results