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Year Number of Results
2011 1
2013 1
2014 2
2015 2
2016 2
2017 2
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2019 3
2020 2
2021 12
2022 2
2023 6

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33 results

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Page 1
Volume electron microscopy.
Peddie CJ, Genoud C, Kreshuk A, Meechan K, Micheva KD, Narayan K, Pape C, Parton RG, Schieber NL, Schwab Y, Titze B, Verkade P, Aubrey A, Collinson LM. Peddie CJ, et al. Among authors: kreshuk a. Nat Rev Methods Primers. 2022 Jul 7;2:51. doi: 10.1038/s43586-022-00131-9. Nat Rev Methods Primers. 2022. PMID: 37409324 Free PMC article.
Profiling cellular diversity in sponges informs animal cell type and nervous system evolution.
Musser JM, Schippers KJ, Nickel M, Mizzon G, Kohn AB, Pape C, Ronchi P, Papadopoulos N, Tarashansky AJ, Hammel JU, Wolf F, Liang C, Hernández-Plaza A, Cantalapiedra CP, Achim K, Schieber NL, Pan L, Ruperti F, Francis WR, Vargas S, Kling S, Renkert M, Polikarpov M, Bourenkov G, Feuda R, Gaspar I, Burkhardt P, Wang B, Bork P, Beck M, Schneider TR, Kreshuk A, Wörheide G, Huerta-Cepas J, Schwab Y, Moroz LL, Arendt D. Musser JM, et al. Among authors: kreshuk a. Science. 2021 Nov 5;374(6568):717-723. doi: 10.1126/science.abj2949. Epub 2021 Nov 4. Science. 2021. PMID: 34735222 Free PMC article.
ilastik: interactive machine learning for (bio)image analysis.
Berg S, Kutra D, Kroeger T, Straehle CN, Kausler BX, Haubold C, Schiegg M, Ales J, Beier T, Rudy M, Eren K, Cervantes JI, Xu B, Beuttenmueller F, Wolny A, Zhang C, Koethe U, Hamprecht FA, Kreshuk A. Berg S, et al. Among authors: kreshuk a. Nat Methods. 2019 Dec;16(12):1226-1232. doi: 10.1038/s41592-019-0582-9. Epub 2019 Sep 30. Nat Methods. 2019. PMID: 31570887 Review.
Embryo-uterine interaction coordinates mouse embryogenesis during implantation.
Bondarenko V, Nikolaev M, Kromm D, Belousov R, Wolny A, Blotenburg M, Zeller P, Rezakhani S, Hugger J, Uhlmann V, Hufnagel L, Kreshuk A, Ellenberg J, van Oudenaarden A, Erzberger A, Lutolf MP, Hiiragi T. Bondarenko V, et al. Among authors: kreshuk a. EMBO J. 2023 Sep 4;42(17):e113280. doi: 10.15252/embj.2022113280. Epub 2023 Jul 31. EMBO J. 2023. PMID: 37522872 Free PMC article.
Understanding metric-related pitfalls in image analysis validation.
Reinke A, Tizabi MD, Baumgartner M, Eisenmann M, Heckmann-Nötzel D, Kavur AE, Rädsch T, Sudre CH, Acion L, Antonelli M, Arbel T, Bakas S, Benis A, Blaschko M, Büttner F, Cardoso MJ, Cheplygina V, Chen J, Christodoulou E, Cimini BA, Collins GS, Farahani K, Ferrer L, Galdran A, van Ginneken B, Glocker B, Godau P, Haase R, Hashimoto DA, Hoffman MM, Huisman M, Isensee F, Jannin P, Kahn CE, Kainmueller D, Kainz B, Karargyris A, Karthikesalingam A, Kenngott H, Kleesiek J, Kofler F, Kooi T, Kopp-Schneider A, Kozubek M, Kreshuk A, Kurc T, Landman BA, Litjens G, Madani A, Maier-Hein K, Martel AL, Mattson P, Meijering E, Menze B, Moons KGM, Müller H, Nichyporuk B, Nickel F, Petersen J, Rafelski SM, Rajpoot N, Reyes M, Riegler MA, Rieke N, Saez-Rodriguez J, Sánchez CI, Shetty S, van Smeden M, Summers RM, Taha AA, Tiulpin A, Tsaftaris SA, Calster BV, Varoquaux G, Wiesenfarth M, Yaniv ZR, Jäger PF, Maier-Hein L. Reinke A, et al. Among authors: kreshuk a. ArXiv. 2023 Feb 9:arXiv:2302.01790v2. Preprint. ArXiv. 2023. PMID: 36945687 Free PMC article.
Segmenting and Tracking Multiple Dividing Targets Using ilastik.
Haubold C, Schiegg M, Kreshuk A, Berg S, Koethe U, Hamprecht FA. Haubold C, et al. Among authors: kreshuk a. Adv Anat Embryol Cell Biol. 2016;219:199-229. doi: 10.1007/978-3-319-28549-8_8. Adv Anat Embryol Cell Biol. 2016. PMID: 27207368 Review.
Neuron Segmentation With High-Level Biological Priors.
Krasowski NE, Beier T, Knott GW, Kothe U, Hamprecht FA, Kreshuk A. Krasowski NE, et al. Among authors: kreshuk a. IEEE Trans Med Imaging. 2018 Apr;37(4):829-839. doi: 10.1109/TMI.2017.2712360. Epub 2017 Jun 6. IEEE Trans Med Imaging. 2018. PMID: 28600240
Deep learning-enhanced light-field imaging with continuous validation.
Wagner N, Beuttenmueller F, Norlin N, Gierten J, Boffi JC, Wittbrodt J, Weigert M, Hufnagel L, Prevedel R, Kreshuk A. Wagner N, et al. Among authors: kreshuk a. Nat Methods. 2021 May;18(5):557-563. doi: 10.1038/s41592-021-01136-0. Epub 2021 May 7. Nat Methods. 2021. PMID: 33963344
33 results