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A monoclonal antibody against staphylococcal enterotoxin B superantigen inhibits SARS-CoV-2 entry in vitro.

Cheng MH, Porritt RA, Rivas MN, Krieger JM, Ozdemir AB, Garcia G Jr, Arumugaswami V, Fries BC, Arditi M, Bahar I. Cheng MH, et al. Among authors: krieger jm. Structure. 2021 Sep 2;29(9):951-962.e3. doi: 10.1016/j.str.2021.04.005. Epub 2021 Apr 29. Structure. 2021. PMID: 33930306 Free PMC article.

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Towards gaining sight of multiscale events: utilizing network models and normal modes in hybrid methods.

Krieger JM, Doruker P, Scott AL, Perahia D, Bahar I. Krieger JM, et al. Curr Opin Struct Biol. 2020 Oct;64:34-41. doi: 10.1016/j.sbi.2020.05.013. Epub 2020 Jul 1. Curr Opin Struct Biol. 2020. PMID: 32622329 Free PMC article. Review.

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Pharmmaker: Pharmacophore modeling and hit identification based on druggability simulations.

Lee JY, Krieger JM, Li H, Bahar I. Lee JY, et al. Among authors: krieger jm. Protein Sci. 2020 Jan;29(1):76-86. doi: 10.1002/pro.3732. Epub 2019 Dec 4. Protein Sci. 2020. PMID: 31576621 Free PMC article.

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Conservation needs to integrate knowledge across scales.

Chaplin-Kramer R, Brauman KA, Cavender-Bares J, Díaz S, Duarte GT, Enquist BJ, Garibaldi LA, Geldmann J, Halpern BS, Hertel TW, Khoury CK, Krieger JM, Lavorel S, Mueller T, Neugarten RA, Pinto-Ledezma J, Polasky S, Purvis A, Reyes-García V, Roehrdanz PR, Shannon LJ, Shaw MR, Strassburg BBN, Tylianakis JM, Verburg PH, Visconti P, Zafra-Calvo N. Chaplin-Kramer R, et al. Among authors: krieger jm. Nat Ecol Evol. 2022 Feb;6(2):118-119. doi: 10.1038/s41559-021-01605-x. Nat Ecol Evol. 2022. PMID: 34824390 No abstract available.

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A monoclonal antibody against staphylococcal enterotoxin B superantigen inhibits SARS-CoV-2 entry in vitro.

Cheng MH, Porritt RA, Rivas MN, Krieger JM, Ozdemir AB, Garcia G Jr, Arumugaswami V, Fries BC, Arditi M, Bahar I. Cheng MH, et al. Among authors: krieger jm. bioRxiv. 2020 Nov 24:2020.11.24.395079. doi: 10.1101/2020.11.24.395079. Preprint. bioRxiv. 2020. PMID: 33269352 Free PMC article. Updated.

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Mechanisms underlying TARP modulation of the GluA1/2-γ8 AMPA receptor.

Herguedas B, Kohegyi BK, Dohrke JN, Watson JF, Zhang D, Ho H, Shaikh SA, Lape R, Krieger JM, Greger IH. Herguedas B, et al. Among authors: krieger jm. Nat Commun. 2022 Feb 8;13(1):734. doi: 10.1038/s41467-022-28404-7. Nat Commun. 2022. PMID: 35136046 Free PMC article.

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ProDy 2.0: Increased Scale and Scope after 10 Years of Protein Dynamics Modelling with Python.

Zhang S, Krieger JM, Zhang Y, Kaya C, Kaynak B, Mikulska-Ruminska K, Doruker P, Li H, Bahar I. Zhang S, et al. Among authors: krieger jm. Bioinformatics. 2021 Apr 5;37(20):3657-9. doi: 10.1093/bioinformatics/btab187. Online ahead of print. Bioinformatics. 2021. PMID: 33822884 Free PMC article.

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Shared Signature Dynamics Tempered by Local Fluctuations Enables Fold Adaptability and Specificity.

Zhang S, Li H, Krieger JM, Bahar I. Zhang S, et al. Among authors: krieger jm. Mol Biol Evol. 2019 Sep 1;36(9):2053-2068. doi: 10.1093/molbev/msz102. Mol Biol Evol. 2019. PMID: 31028708 Free PMC article.

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Conformational recognition of an intrinsically disordered protein.

Krieger JM, Fusco G, Lewitzky M, Simister PC, Marchant J, Camilloni C, Feller SM, De Simone A. Krieger JM, et al. Biophys J. 2014 Apr 15;106(8):1771-9. doi: 10.1016/j.bpj.2014.03.004. Biophys J. 2014. PMID: 24739176 Free PMC article.

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Protein dynamics developments for the large scale and cryoEM: case study of ProDy 2.0.

Krieger JM, Sorzano COS, Carazo JM, Bahar I. Krieger JM, et al. Acta Crystallogr D Struct Biol. 2022 Apr 1;78(Pt 4):399-409. doi: 10.1107/S2059798322001966. Epub 2022 Mar 16. Acta Crystallogr D Struct Biol. 2022. PMID: 35362464 Free PMC article. Review.

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