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Year Number of Results
2010 3
2012 1
2013 1
2014 1
2015 1
2016 1
2017 3
2018 1
2019 4
2021 0
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15 results
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Page 1
Best practices for benchmarking germline small-variant calls in human genomes.
Krusche P, Trigg L, Boutros PC, Mason CE, De La Vega FM, Moore BL, Gonzalez-Porta M, Eberle MA, Tezak Z, Lababidi S, Truty R, Asimenos G, Funke B, Fleharty M, Chapman BA, Salit M, Zook JM; Global Alliance for Genomics and Health Benchmarking Team. Krusche P, et al. Nat Biotechnol. 2019 May;37(5):555-560. doi: 10.1038/s41587-019-0054-x. Epub 2019 Mar 11. Nat Biotechnol. 2019. PMID: 30858580 Free PMC article.
Strelka2: fast and accurate calling of germline and somatic variants.
Kim S, Scheffler K, Halpern AL, Bekritsky MA, Noh E, Källberg M, Chen X, Kim Y, Beyter D, Krusche P, Saunders CT. Kim S, et al. Among authors: krusche p. Nat Methods. 2018 Aug;15(8):591-594. doi: 10.1038/s41592-018-0051-x. Epub 2018 Jul 16. Nat Methods. 2018. PMID: 30013048
A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree.
Eberle MA, Fritzilas E, Krusche P, Källberg M, Moore BL, Bekritsky MA, Iqbal Z, Chuang HY, Humphray SJ, Halpern AL, Kruglyak S, Margulies EH, McVean G, Bentley DR. Eberle MA, et al. Among authors: krusche p. Genome Res. 2017 Jan;27(1):157-164. doi: 10.1101/gr.210500.116. Epub 2016 Nov 30. Genome Res. 2017. PMID: 27903644 Free PMC article.
ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions.
Dolzhenko E, Deshpande V, Schlesinger F, Krusche P, Petrovski R, Chen S, Emig-Agius D, Gross A, Narzisi G, Bowman B, Scheffler K, van Vugt JJFA, French C, Sanchis-Juan A, Ibáñez K, Tucci A, Lajoie BR, Veldink JH, Raymond FL, Taft RJ, Bentley DR, Eberle MA. Dolzhenko E, et al. Among authors: krusche p. Bioinformatics. 2019 Nov 1;35(22):4754-4756. doi: 10.1093/bioinformatics/btz431. Bioinformatics. 2019. PMID: 31134279 Free PMC article.
Author Correction: Best practices for benchmarking germline small-variant calls in human genomes.
Krusche P, Trigg L, Boutros PC, Mason CE, De La Vega FM, Moore BL, Gonzalez-Porta M, Eberle MA, Tezak Z, Lababidi S, Truty R, Asimenos G, Funke B, Fleharty M, Chapman BA, Salit M, Zook JM; Global Alliance for Genomics and Health Benchmarking Team. Krusche P, et al. Nat Biotechnol. 2019 May;37(5):567. doi: 10.1038/s41587-019-0108-0. Nat Biotechnol. 2019. PMID: 30899106
Heritability of chronic venous disease.
Fiebig A, Krusche P, Wolf A, Krawczak M, Timm B, Nikolaus S, Frings N, Schreiber S. Fiebig A, et al. Among authors: krusche p. Hum Genet. 2010 Jun;127(6):669-74. doi: 10.1007/s00439-010-0812-9. Epub 2010 Mar 31. Hum Genet. 2010. PMID: 20354728 Free PMC article.
Cyclin-dependent kinase inhibitor p20 controls circadian cell-cycle timing.
Laranjeiro R, Tamai TK, Peyric E, Krusche P, Ott S, Whitmore D. Laranjeiro R, et al. Among authors: krusche p. Proc Natl Acad Sci U S A. 2013 Apr 23;110(17):6835-40. doi: 10.1073/pnas.1217912110. Epub 2013 Apr 8. Proc Natl Acad Sci U S A. 2013. PMID: 23569261 Free PMC article.
Evolutionary analysis of regulatory sequences (EARS) in plants.
Picot E, Krusche P, Tiskin A, Carré I, Ott S. Picot E, et al. Among authors: krusche p. Plant J. 2010 Oct;64(1):165-76. doi: 10.1111/j.1365-313X.2010.04314.x. Epub 2010 Sep 16. Plant J. 2010. PMID: 20659275 Free article.
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