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Water-Mediated Transmission of Plant, Animal, and Human Viruses.

Mehle N, Gutiérrez-Aguirre I, Kutnjak D, Ravnikar M. Mehle N, et al. Among authors: kutnjak d. Adv Virus Res. 2018;101:85-128. doi: 10.1016/bs.aivir.2018.02.004. Epub 2018 Apr 26. Adv Virus Res. 2018. PMID: 29908595 Review.

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A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses.

Kutnjak D, Tamisier L, Adams I, Boonham N, Candresse T, Chiumenti M, De Jonghe K, Kreuze JF, Lefebvre M, Silva G, Malapi-Wight M, Margaria P, Mavrič Pleško I, McGreig S, Miozzi L, Remenant B, Reynard JS, Rollin J, Rott M, Schumpp O, Massart S, Haegeman A. Kutnjak D, et al. Microorganisms. 2021 Apr 14;9(4):841. doi: 10.3390/microorganisms9040841. Microorganisms. 2021. PMID: 33920047 Free PMC article. Review.

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Global Advances in Tomato Virome Research: Current Status and the Impact of High-Throughput Sequencing.

Rivarez MPS, Vučurović A, Mehle N, Ravnikar M, Kutnjak D. Rivarez MPS, et al. Among authors: kutnjak d. Front Microbiol. 2021 May 21;12:671925. doi: 10.3389/fmicb.2021.671925. eCollection 2021. Front Microbiol. 2021. PMID: 34093492 Free PMC article. Review.

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Metagenomic characterization of parental and production CHO cell lines for detection of adventitious viruses.

Bačnik K, Kutnjak D, Jerič Kokelj B, Tuta N, Lončar T, Vogelsang M, Ravnikar M. Bačnik K, et al. Among authors: kutnjak d. Biologicals. 2021 Jan;69:70-75. doi: 10.1016/j.biologicals.2020.11.001. Epub 2020 Nov 24. Biologicals. 2021. PMID: 33246870 Free article.

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Interlaboratory Comparison Study on Ribodepleted Total RNA High-Throughput Sequencing for Plant Virus Diagnostics and Bioinformatic Competence.

Gaafar YZA, Westenberg M, Botermans M, László K, De Jonghe K, Foucart Y, Ferretti L, Kutnjak D, Pecman A, Mehle N, Kreuze J, Muller G, Vakirlis N, Beris D, Varveri C, Ziebell H. Gaafar YZA, et al. Among authors: kutnjak d. Pathogens. 2021 Sep 12;10(9):1174. doi: 10.3390/pathogens10091174. Pathogens. 2021. PMID: 34578206 Free PMC article.

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Virome Analysis of Signal Crayfish (Pacifastacus leniusculus) along Its Invasion Range Reveals Diverse and Divergent RNA Viruses.

Bačnik K, Kutnjak D, Černi S, Bielen A, Hudina S. Bačnik K, et al. Among authors: kutnjak d. Viruses. 2021 Nov 11;13(11):2259. doi: 10.3390/v13112259. Viruses. 2021. PMID: 34835065 Free PMC article.

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Transmission modes affect the population structure of potato virus Y in potato.

da Silva W, Kutnjak D, Xu Y, Xu Y, Giovannoni J, Elena SF, Gray S. da Silva W, et al. Among authors: kutnjak d. PLoS Pathog. 2020 Jun 23;16(6):e1008608. doi: 10.1371/journal.ppat.1008608. eCollection 2020 Jun. PLoS Pathog. 2020. PMID: 32574227 Free PMC article.

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Detection of Four New Tomato Viruses in Serbia Using Post Hoc High-Throughput Sequencing Analysis of Samples From a Large-Scale Field Survey.

Vučurović A, Kutnjak D, Mehle N, Stanković I, Pecman A, Bulajić A, Krstić B, Ravnikar M. Vučurović A, et al. Among authors: kutnjak d. Plant Dis. 2021 Sep;105(9):2325-2332. doi: 10.1094/PDIS-09-20-1915-RE. Epub 2021 Oct 6. Plant Dis. 2021. PMID: 33761774 Free article.

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Identification of novel reassortant mammalian orthoreoviruses from bats in Slovenia.

Naglič T, Rihtarič D, Hostnik P, Toplak N, Koren S, Kuhar U, Jamnikar-Ciglenečki U, Kutnjak D, Steyer A. Naglič T, et al. Among authors: kutnjak d. BMC Vet Res. 2018 Sep 3;14(1):264. doi: 10.1186/s12917-018-1585-y. BMC Vet Res. 2018. PMID: 30176848 Free PMC article.

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Viromics and infectivity analysis reveal the release of infective plant viruses from wastewater into the environment.

Bačnik K, Kutnjak D, Pecman A, Mehle N, Tušek Žnidarič M, Gutiérrez Aguirre I, Ravnikar M. Bačnik K, et al. Among authors: kutnjak d. Water Res. 2020 Jun 15;177:115628. doi: 10.1016/j.watres.2020.115628. Epub 2020 Feb 22. Water Res. 2020. PMID: 32299020 Free article.

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