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The impact of contact tracing and household bubbles on deconfinement strategies for COVID-19.

Willem L, Abrams S, Libin PJK, Coletti P, Kuylen E, Petrof O, Møgelmose S, Wambua J, Herzog SA, Faes C, Beutels P, Hens N. Willem L, et al. Among authors: libin pjk. Nat Commun. 2021 Mar 9;12(1):1524. doi: 10.1038/s41467-021-21747-7. Nat Commun. 2021. PMID: 33750778 Free PMC article.

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Time to Harmonize Dengue Nomenclature and Classification.

Cuypers L, Libin PJK, Simmonds P, Nowé A, Muñoz-Jordán J, Alcantara LCJ, Vandamme AM, Santiago GA, Theys K. Cuypers L, et al. Among authors: libin pjk. Viruses. 2018 Oct 18;10(10):569. doi: 10.3390/v10100569. Viruses. 2018. PMID: 30340326 Free PMC article.

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Assessing the feasibility and effectiveness of household-pooled universal testing to control COVID-19 epidemics.

Libin PJK, Willem L, Verstraeten T, Torneri A, Vanderlocht J, Hens N. Libin PJK, et al. PLoS Comput Biol. 2021 Mar 9;17(3):e1008688. doi: 10.1371/journal.pcbi.1008688. eCollection 2021 Mar. PLoS Comput Biol. 2021. PMID: 33690626 Free PMC article.

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Multi-Agent Thompson Sampling for Bandit Applications with Sparse Neighbourhood Structures.

Verstraeten T, Bargiacchi E, Libin PJK, Helsen J, Roijers DM, Nowé A. Verstraeten T, et al. Among authors: libin pjk. Sci Rep. 2020 Apr 21;10(1):6728. doi: 10.1038/s41598-020-62939-3. Sci Rep. 2020. PMID: 32317732 Free PMC article.

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VIRULIGN: fast codon-correct alignment and annotation of viral genomes.

Libin PJK, Deforche K, Abecasis AB, Theys K. Libin PJK, et al. Bioinformatics. 2019 May 15;35(10):1763-1765. doi: 10.1093/bioinformatics/bty851. Bioinformatics. 2019. PMID: 30295730 Free PMC article.

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Comparison of two simulators for individual based models in HIV epidemiology in a population with HSV 2 in Yaoundé (Cameroon).

Hendrickx DM, Sousa JD, Libin PJK, Delva W, Liesenborgs J, Hens N, Müller V, Vandamme AM. Hendrickx DM, et al. Among authors: libin pjk. Sci Rep. 2021 Jul 19;11(1):14696. doi: 10.1038/s41598-021-94289-z. Sci Rep. 2021. PMID: 34282252 Free PMC article.

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Controlling SARS-CoV-2 in schools using repetitive testing strategies.

Torneri A, Willem L, Colizza V, Kremer C, Meuris C, Darcis G, Hens N, Libin PJK. Torneri A, et al. Among authors: libin pjk. Elife. 2022 Jul 5;11:e75593. doi: 10.7554/eLife.75593. Elife. 2022. PMID: 35787310 Free PMC article.

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A Tale of Three Recent Pandemics: Influenza, HIV and SARS-CoV-2.

Miranda MNS, Pingarilho M, Pimentel V, Torneri A, Seabra SG, Libin PJK, Abecasis AB. Miranda MNS, et al. Among authors: libin pjk. Front Microbiol. 2022 Jun 2;13:889643. doi: 10.3389/fmicb.2022.889643. eCollection 2022. Front Microbiol. 2022. PMID: 35722303 Free PMC article. Review.

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A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes.

Fonseca V, Libin PJK, Theys K, Faria NR, Nunes MRT, Restovic MI, Freire M, Giovanetti M, Cuypers L, Nowé A, Abecasis A, Deforche K, Santiago GA, Siqueira IC, San EJ, Machado KCB, Azevedo V, Filippis AMB, Cunha RVD, Pybus OG, Vandamme AM, Alcantara LCJ, de Oliveira T. Fonseca V, et al. Among authors: libin pjk. PLoS Negl Trop Dis. 2019 May 8;13(5):e0007231. doi: 10.1371/journal.pntd.0007231. eCollection 2019 May. PLoS Negl Trop Dis. 2019. PMID: 31067235 Free PMC article.

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An Evolutionary Model-Based Approach To Quantify the Genetic Barrier to Drug Resistance in Fast-Evolving Viruses and Its Application to HIV-1 Subtypes and Integrase Inhibitors.

Theys K, Libin PJK, Van Laethem K, Abecasis AB. Theys K, et al. Among authors: libin pjk. Antimicrob Agents Chemother. 2019 Jul 25;63(8):e00539-19. doi: 10.1128/AAC.00539-19. Print 2019 Aug. Antimicrob Agents Chemother. 2019. PMID: 31109980 Free PMC article.

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