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Classification in biological networks with hypergraphlet kernels.
Lugo-Martinez J, Zeiberg D, Gaudelet T, Malod-Dognin N, Przulj N, Radivojac P. Lugo-Martinez J, et al. Bioinformatics. 2021 May 17;37(7):1000-1007. doi: 10.1093/bioinformatics/btaa768. Bioinformatics. 2021. PMID: 32886115 Free PMC article.
Inferring the molecular and phenotypic impact of amino acid variants with MutPred2.
Pejaver V, Urresti J, Lugo-Martinez J, Pagel KA, Lin GN, Nam HJ, Mort M, Cooper DN, Sebat J, Iakoucheva LM, Mooney SD, Radivojac P. Pejaver V, et al. Among authors: lugo martinez j. Nat Commun. 2020 Nov 20;11(1):5918. doi: 10.1038/s41467-020-19669-x. Nat Commun. 2020. PMID: 33219223 Free PMC article.
Evaluation of enzyme activity predictions for variants of unknown significance in Arylsulfatase A.
Jain S, Trinidad M, Nguyen TB, Jones K, Neto SD, Ge F, Glagovsky A, Jones C, Moran G, Wang B, Rahimi K, Çalıcı SZ, Cedillo LR, Berardelli S, Özden B, Chen K, Katsonis P, Williams A, Lichtarge O, Rana S, Pradhan S, Srinivasan R, Sajeed R, Joshi D, Faraggi E, Jernigan R, Kloczkowski A, Xu J, Song Z, Özkan S, Padilla N, de la Cruz X, Acuna-Hidalgo R, Grafmüller A, Barrón LTJ, Manfredi M, Savojardo C, Babbi G, Martelli PL, Casadio R, Sun Y, Zhu S, Shen Y, Pucci F, Rooman M, Cia G, Raimondi D, Hermans P, Kwee S, Chen E, Astore C, Kamandula A, Pejaver V, Ramola R, Velyunskiy M, Zeiberg D, Mishra R, Sterling T, Goldstein JL, Lugo-Martinez J, Kazi S, Li S, Long K, Brenner SE, Bakolitsa C, Radivojac P, Suhr D, Suhr T, Clark WT. Jain S, et al. Among authors: lugo martinez j. bioRxiv [Preprint]. 2024 May 19:2024.05.16.594558. doi: 10.1101/2024.05.16.594558. bioRxiv. 2024. PMID: 38798479 Free PMC article. Preprint.
14 results