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Page 1
Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing.
Xiao W, Ren L, Chen Z, Fang LT, Zhao Y, Lack J, Guan M, Zhu B, Jaeger E, Kerrigan L, Blomquist TM, Hung T, Sultan M, Idler K, Lu C, Scherer A, Kusko R, Moos M, Xiao C, Sherry ST, Abaan OD, Chen W, Chen X, Nordlund J, Liljedahl U, Maestro R, Polano M, Drabek J, Vojta P, Kõks S, Reimann E, Madala BS, Mercer T, Miller C, Jacob H, Truong T, Moshrefi A, Natarajan A, Granat A, Schroth GP, Kalamegham R, Peters E, Petitjean V, Walton A, Shen TW, Talsania K, Vera CJ, Langenbach K, de Mars M, Hipp JA, Willey JC, Wang J, Shetty J, Kriga Y, Raziuddin A, Tran B, Zheng Y, Yu Y, Cam M, Jailwala P, Nguyen C, Meerzaman D, Chen Q, Yan C, Ernest B, Mehra U, Jensen RV, Jones W, Li JL, Papas BN, Pirooznia M, Chen YC, Seifuddin F, Li Z, Liu X, Resch W, Wang J, Wu L, Yavas G, Miles C, Ning B, Tong W, Mason CE, Donaldson E, Lababidi S, Staudt LM, Tezak Z, Hong H, Wang C, Shi L. Xiao W, et al. Nat Biotechnol. 2021 Sep;39(9):1141-1150. doi: 10.1038/s41587-021-00994-5. Epub 2021 Sep 9. Nat Biotechnol. 2021. PMID: 34504346 Free PMC article.
High-Accuracy Airborne Rangefinder via Deep Learning Based on Piezoelectric Micromachined Ultrasonic Cantilevers.
Moshrefi A, Ali A, Tariq Balghari S, Nabki F. Moshrefi A, et al. IEEE Trans Ultrason Ferroelectr Freq Control. 2024 Sep;71(9):1074-1086. doi: 10.1109/TUFFC.2024.3433407. Epub 2024 Sep 4. IEEE Trans Ultrason Ferroelectr Freq Control. 2024. PMID: 39052462
Cantilevers are used to create a functional ultrasonic rangefinder with a range of 0-1 m. This is achieved through a design of custom arrays. This research investigates various classification techniques to identify airborne ranges using ultrasonic signals. ...
Cantilevers are used to create a functional ultrasonic rangefinder with a range of 0-1 m. This is achieved through a design of custom …
Extensive sequencing of seven human genomes to characterize benchmark reference materials.
Zook JM, Catoe D, McDaniel J, Vang L, Spies N, Sidow A, Weng Z, Liu Y, Mason CE, Alexander N, Henaff E, McIntyre AB, Chandramohan D, Chen F, Jaeger E, Moshrefi A, Pham K, Stedman W, Liang T, Saghbini M, Dzakula Z, Hastie A, Cao H, Deikus G, Schadt E, Sebra R, Bashir A, Truty RM, Chang CC, Gulbahce N, Zhao K, Ghosh S, Hyland F, Fu Y, Chaisson M, Xiao C, Trow J, Sherry ST, Zaranek AW, Ball M, Bobe J, Estep P, Church GM, Marks P, Kyriazopoulou-Panagiotopoulou S, Zheng GX, Schnall-Levin M, Ordonez HS, Mudivarti PA, Giorda K, Sheng Y, Rypdal KB, Salit M. Zook JM, et al. Sci Data. 2016 Jun 7;3:160025. doi: 10.1038/sdata.2016.25. Sci Data. 2016. PMID: 27271295 Free PMC article.
Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing.
Fang LT, Zhu B, Zhao Y, Chen W, Yang Z, Kerrigan L, Langenbach K, de Mars M, Lu C, Idler K, Jacob H, Zheng Y, Ren L, Yu Y, Jaeger E, Schroth GP, Abaan OD, Talsania K, Lack J, Shen TW, Chen Z, Stanbouly S, Tran B, Shetty J, Kriga Y, Meerzaman D, Nguyen C, Petitjean V, Sultan M, Cam M, Mehta M, Hung T, Peters E, Kalamegham R, Sahraeian SME, Mohiyuddin M, Guo Y, Yao L, Song L, Lam HYK, Drabek J, Vojta P, Maestro R, Gasparotto D, Kõks S, Reimann E, Scherer A, Nordlund J, Liljedahl U, Jensen RV, Pirooznia M, Li Z, Xiao C, Sherry ST, Kusko R, Moos M, Donaldson E, Tezak Z, Ning B, Tong W, Li J, Duerken-Hughes P, Catalanotti C, Maheshwari S, Shuga J, Liang WS, Keats J, Adkins J, Tassone E, Zismann V, McDaniel T, Trent J, Foox J, Butler D, Mason CE, Hong H, Shi L, Wang C, Xiao W; Somatic Mutation Working Group of Sequencing Quality Control Phase II Consortium. Fang LT, et al. Nat Biotechnol. 2021 Sep;39(9):1151-1160. doi: 10.1038/s41587-021-00993-6. Epub 2021 Sep 9. Nat Biotechnol. 2021. PMID: 34504347 Free PMC article.
Electrodeless Synthesis of Low Dispersity Au Nanoparticles and Nanoclusters at an Immiscible Micro Water/Ionic Liquid Interface.
Moshrefi R, Stockmann TJ. Moshrefi R, et al. Nanomaterials (Basel). 2022 Aug 11;12(16):2748. doi: 10.3390/nano12162748. Nanomaterials (Basel). 2022. PMID: 36014613 Free PMC article.
Herein, Au NPs were electrochemically generated at a water|ionic liquid (w|IL) immiscible micro-interface, 25 m in diameter, using a redox active IL and compared to results at a water|oil (w|o) one. ...
Herein, Au NPs were electrochemically generated at a water|ionic liquid (w|IL) immiscible micro-interface, 25 m in diameter, using a …
Combination of 5-azaytidine and hanging drop culture convert fat cell into cardiac cell.
Bagheri-Hosseinabadi Z, Seyedi F, Mollaei HR, Moshrefi M, Seifalian A. Bagheri-Hosseinabadi Z, et al. Biotechnol Appl Biochem. 2021 Feb;68(1):92-101. doi: 10.1002/bab.1897. Epub 2020 Feb 20. Biotechnol Appl Biochem. 2021. PMID: 32028539
Then DNA content, gene expression, and protein content were analyzed. 3D HD culture resulted in a higher percentage of cells in G0/G1 and S phase in the cell division cycle, whereas 2D culture led to a greater percentage of cells in the G2/M phase. A significantly higher g …
Then DNA content, gene expression, and protein content were analyzed. 3D HD culture resulted in a higher percentage of cells in G0/G1 and S …
In Situ Monitoring of Hypochlorite Decay under Radiation Using Differential Pulse Voltammetry.
Skotar T, Mena-Morcillo E, Moshrefi R, Briggs S, Keech PG, Behazin M, King F, Gateman SM. Skotar T, et al. ACS Electrochem. 2026 Feb 2;2(3):620-627. doi: 10.1021/acselectrochem.5c00338. eCollection 2026 Mar 5. ACS Electrochem. 2026. PMID: 41810160 Free PMC article.
This work integrates in situ differential pulse voltammetry (DPV) with finite-element kinetic modeling to track and interpret the decay of hypochlorite (OCl(-)) in aerated 0.1 M NaCl at pH 9.9 under a dose rate of 725 Gy h(-1). Using a three-electrode setup inside a (60)C …
This work integrates in situ differential pulse voltammetry (DPV) with finite-element kinetic modeling to track and interpret the decay of h …