MacManes MD[au] - Search Results

Year	Number of Results
2009	1
2011	2
2012	2
2013	3
2014	2
2016	4
2017	6
2018	3
2019	4
2020	5
2021	6
2022	3

1

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.

Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, MacManes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey CN, Henschel R, LeDuc RD, Friedman N, Regev A. Haas BJ, et al. Among authors: macmanes md. Nat Protoc. 2013 Aug;8(8):1494-512. doi: 10.1038/nprot.2013.084. Epub 2013 Jul 11. Nat Protoc. 2013. PMID: 23845962 Free PMC article.

2

The Oyster River Protocol: a multi-assembler and kmer approach for de novo transcriptome assembly.

MacManes MD. MacManes MD. PeerJ. 2018 Aug 3;6:e5428. doi: 10.7717/peerj.5428. eCollection 2018. PeerJ. 2018. PMID: 30083482 Free PMC article.

3

Disentangling environmental drivers of circadian metabolism in desert-adapted mice.

Colella JP, Blumstein DM, MacManes MD. Colella JP, et al. Among authors: macmanes md. J Exp Biol. 2021 Sep 15;224(18):jeb242529. doi: 10.1242/jeb.242529. Epub 2021 Sep 27. J Exp Biol. 2021. PMID: 34495305 Free PMC article.

4

Limited Evidence for Parallel Evolution Among Desert-Adapted Peromyscus Deer Mice.

Colella JP, Tigano A, Dudchenko O, Omer AD, Khan R, Bochkov ID, Aiden EL, MacManes MD. Colella JP, et al. Among authors: macmanes md. J Hered. 2021 May 24;112(3):286-302. doi: 10.1093/jhered/esab009. J Hered. 2021. PMID: 33686424 Free PMC article.

5

Improving transcriptome assembly through error correction of high-throughput sequence reads.

Macmanes MD, Eisen MB. Macmanes MD, et al. PeerJ. 2013 Jul 23;1:e113. doi: 10.7717/peerj.113. Print 2013. PeerJ. 2013. PMID: 23904992 Free PMC article.

6

Signal, bias, and the role of transcriptome assembly quality in phylogenomic inference.

Spillane JL, LaPolice TM, MacManes MD, Plachetzki DC. Spillane JL, et al. Among authors: macmanes md. BMC Ecol Evol. 2021 Mar 16;21(1):43. doi: 10.1186/s12862-021-01772-2. BMC Ecol Evol. 2021. PMID: 33726665 Free PMC article.

7

Feather Gene Expression Elucidates the Developmental Basis of Plumage Iridescence in African Starlings.

Rubenstein DR, Corvelo A, MacManes MD, Maia R, Narzisi G, Rousaki A, Vandenabeele P, Shawkey MD, Solomon J. Rubenstein DR, et al. Among authors: macmanes md. J Hered. 2021 Aug 25;112(5):417-429. doi: 10.1093/jhered/esab014. J Hered. 2021. PMID: 33885791

8

Dynamic pigmentary and structural coloration within cephalopod chromatophore organs.

Williams TL, Senft SL, Yeo J, Martín-Martínez FJ, Kuzirian AM, Martin CA, DiBona CW, Chen CT, Dinneen SR, Nguyen HT, Gomes CM, Rosenthal JJC, MacManes MD, Chu F, Buehler MJ, Hanlon RT, Deravi LF. Williams TL, et al. Among authors: macmanes md. Nat Commun. 2019 Mar 1;10(1):1004. doi: 10.1038/s41467-019-08891-x. Nat Commun. 2019. PMID: 30824708 Free PMC article.

9

The Genome of the Softshell Clam Mya arenaria and the Evolution of Apoptosis.

Plachetzki DC, Pankey MS, MacManes MD, Lesser MP, Walker CW. Plachetzki DC, et al. Among authors: macmanes md. Genome Biol Evol. 2020 Oct 1;12(10):1681-1693. doi: 10.1093/gbe/evaa143. Genome Biol Evol. 2020. PMID: 32653903 Free PMC article.

10

Sex-biased transcriptomic response of the reproductive axis to stress.

Calisi RM, Austin SH, Lang AS, MacManes MD. Calisi RM, et al. Among authors: macmanes md. Horm Behav. 2018 Apr;100:56-68. doi: 10.1016/j.yhbeh.2017.11.011. Epub 2018 Mar 20. Horm Behav. 2018. PMID: 29378207 Free article.

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