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Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy.

Martin-Sancho L, Tripathi S, Rodriguez-Frandsen A, Pache L, Sanchez-Aparicio M, McGregor MJ, Haas KM, Swaney DL, Nguyen TT, Mamede JI, Churas C, Pratt D, Rosenthal SB, Riva L, Nguyen C, Beltran-Raygoza N, Soonthornvacharin S, Wang G, Jimenez-Morales D, De Jesus PD, Moulton HM, Stein DA, Chang MW, Benner C, Ideker T, Albrecht RA, Hultquist JF, Krogan NJ, García-Sastre A, Chanda SK. Martin-Sancho L, et al. Among authors: mamede ji. Nat Microbiol. 2021 Oct;6(10):1319-1333. doi: 10.1038/s41564-021-00964-2. Epub 2021 Sep 23. Nat Microbiol. 2021. PMID: 34556855

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A New Generation of Functional Tagged Proteins for HIV Fluorescence Imaging.

Mamede JI, Griffin J, Gambut S, Hope TJ. Mamede JI, et al. Viruses. 2021 Feb 28;13(3):386. doi: 10.3390/v13030386. Viruses. 2021. PMID: 33670986 Free PMC article.

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Coincident rapid expansion of two SARS-CoV-2 lineages with enhanced infectivity in Nigeria.

Ozer EA, Simons LM, Adewumi OM, Fowotade AA, Omoruyi EC, Adeniji JA, Dean TJ, Zayas J, Bhimalli PP, Ash MK, Godzik A, Schneider JR, Mamede JI, Taiwo BO, Hultquist JF, Lorenzo-Redondo R. Ozer EA, et al. Among authors: mamede ji. medRxiv. 2021 Jul 2:2021.04.09.21255206. doi: 10.1101/2021.04.09.21255206. Preprint. medRxiv. 2021. PMID: 33880483 Free PMC article.

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Impact of Nucleoporin-Mediated Chromatin Localization and Nuclear Architecture on HIV Integration Site Selection.

Wong RW, Mamede JI, Hope TJ. Wong RW, et al. Among authors: mamede ji. J Virol. 2015 Oct;89(19):9702-5. doi: 10.1128/JVI.01669-15. Epub 2015 Jul 1. J Virol. 2015. PMID: 26136574 Free PMC article. Review.

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HIV Infection and Spread between Th₁₇ Cells.

Zayas JP, Mamede JI. Zayas JP, et al. Among authors: mamede ji. Viruses. 2022 Feb 16;14(2):404. doi: 10.3390/v14020404. Viruses. 2022. PMID: 35215997 Free PMC article. Review.

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Early cytoplasmic uncoating is associated with infectivity of HIV-1.

Mamede JI, Cianci GC, Anderson MR, Hope TJ. Mamede JI, et al. Proc Natl Acad Sci U S A. 2017 Aug 22;114(34):E7169-E7178. doi: 10.1073/pnas.1706245114. Epub 2017 Aug 7. Proc Natl Acad Sci U S A. 2017. PMID: 28784755 Free PMC article.

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Multiple expansions of globally uncommon SARS-CoV-2 lineages in Nigeria.

Ozer EA, Simons LM, Adewumi OM, Fowotade AA, Omoruyi EC, Adeniji JA, Olayinka OA, Dean TJ, Zayas J, Bhimalli PP, Ash MK, Maiga AI, Somboro AM, Maiga M, Godzik A, Schneider JR, Mamede JI, Taiwo BO, Hultquist JF, Lorenzo-Redondo R. Ozer EA, et al. Among authors: mamede ji. Nat Commun. 2022 Feb 3;13(1):688. doi: 10.1038/s41467-022-28317-5. Nat Commun. 2022. PMID: 35115515 Free PMC article.

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Distinguishing signal from autofluorescence in cryogenic correlated light and electron microscopy of mammalian cells.

Carter SD, Mageswaran SK, Farino ZJ, Mamede JI, Oikonomou CM, Hope TJ, Freyberg Z, Jensen GJ. Carter SD, et al. Among authors: mamede ji. J Struct Biol. 2018 Jan;201(1):15-25. doi: 10.1016/j.jsb.2017.10.009. Epub 2017 Oct 25. J Struct Biol. 2018. PMID: 29078993 Free PMC article.

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Correlated cryogenic fluorescence microscopy and electron cryo-tomography shows that exogenous TRIM5α can form hexagonal lattices or autophagy aggregates in vivo.

Carter SD, Mamede JI, Hope TJ, Jensen GJ. Carter SD, et al. Among authors: mamede ji. Proc Natl Acad Sci U S A. 2020 Nov 24;117(47):29702-29711. doi: 10.1073/pnas.1920323117. Epub 2020 Nov 5. Proc Natl Acad Sci U S A. 2020. PMID: 33154161 Free PMC article.

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Multiple Pathways To Avoid Beta Interferon Sensitivity of HIV-1 by Mutations in Capsid.

Sultana T, Mamede JI, Saito A, Ode H, Nohata K, Cohen R, Nakayama EE, Iwatani Y, Yamashita M, Hope TJ, Shioda T. Sultana T, et al. Among authors: mamede ji. J Virol. 2019 Nov 13;93(23):e00986-19. doi: 10.1128/JVI.00986-19. Print 2019 Dec 1. J Virol. 2019. PMID: 31511380 Free PMC article.

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