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Post-transcriptional regulation of antiviral gene expression by N6-methyladenosine.

McFadden MJ, McIntyre ABR, Mourelatos H, Abell NS, Gokhale NS, Ipas H, Xhemalçe B, Mason CE, Horner SM. McFadden MJ, et al. Among authors: mcintyre abr. Cell Rep. 2021 Mar 2;34(9):108798. doi: 10.1016/j.celrep.2021.108798. Cell Rep. 2021. PMID: 33657363 Free PMC article.

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Altered m⁶A Modification of Specific Cellular Transcripts Affects Flaviviridae Infection.

Gokhale NS, McIntyre ABR, Mattocks MD, Holley CL, Lazear HM, Mason CE, Horner SM. Gokhale NS, et al. Among authors: mcintyre abr. Mol Cell. 2020 Feb 6;77(3):542-555.e8. doi: 10.1016/j.molcel.2019.11.007. Epub 2019 Dec 3. Mol Cell. 2020. PMID: 31810760 Free PMC article.

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N6-Methyladenosine in Flaviviridae Viral RNA Genomes Regulates Infection.

Gokhale NS, McIntyre ABR, McFadden MJ, Roder AE, Kennedy EM, Gandara JA, Hopcraft SE, Quicke KM, Vazquez C, Willer J, Ilkayeva OR, Law BA, Holley CL, Garcia-Blanco MA, Evans MJ, Suthar MS, Bradrick SS, Mason CE, Horner SM. Gokhale NS, et al. Among authors: mcintyre abr. Cell Host Microbe. 2016 Nov 9;20(5):654-665. doi: 10.1016/j.chom.2016.09.015. Epub 2016 Oct 20. Cell Host Microbe. 2016. PMID: 27773535 Free PMC article.

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N6-methyladenosine modification of hepatitis B virus RNA differentially regulates the viral life cycle.

Imam H, Khan M, Gokhale NS, McIntyre ABR, Kim GW, Jang JY, Kim SJ, Mason CE, Horner SM, Siddiqui A. Imam H, et al. Among authors: mcintyre abr. Proc Natl Acad Sci U S A. 2018 Aug 28;115(35):8829-8834. doi: 10.1073/pnas.1808319115. Epub 2018 Aug 13. Proc Natl Acad Sci U S A. 2018. PMID: 30104368 Free PMC article.

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Clinical Genomics: Challenges and Opportunities.

Vijay P, McIntyre AB, Mason CE, Greenfield JP, Li S. Vijay P, et al. Among authors: mcintyre ab. Crit Rev Eukaryot Gene Expr. 2016;26(2):97-113. doi: 10.1615/CritRevEukaryotGeneExpr.2016015724. Crit Rev Eukaryot Gene Expr. 2016. PMID: 27480773 Free PMC article. Review.

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Limits in the detection of m⁶A changes using MeRIP/m⁶A-seq.

McIntyre ABR, Gokhale NS, Cerchietti L, Jaffrey SR, Horner SM, Mason CE. McIntyre ABR, et al. Sci Rep. 2020 Apr 20;10(1):6590. doi: 10.1038/s41598-020-63355-3. Sci Rep. 2020. PMID: 32313079 Free PMC article.

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Evolutionary dynamics of microRNA target sites across vertebrate evolution.

Simkin A, Geissler R, McIntyre ABR, Grimson A. Simkin A, et al. Among authors: mcintyre abr. PLoS Genet. 2020 Feb 3;16(2):e1008285. doi: 10.1371/journal.pgen.1008285. eCollection 2020 Feb. PLoS Genet. 2020. PMID: 32012152 Free PMC article.

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Nanopore sequencing in microgravity.

McIntyre ABR, Rizzardi L, Yu AM, Alexander N, Rosen GL, Botkin DJ, Stahl SE, John KK, Castro-Wallace SL, McGrath K, Burton AS, Feinberg AP, Mason CE. McIntyre ABR, et al. NPJ Microgravity. 2016 Oct 20;2:16035. doi: 10.1038/npjmgrav.2016.35. eCollection 2016. NPJ Microgravity. 2016. PMID: 28725742 Free PMC article.

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Single-molecule sequencing detection of N6-methyladenine in microbial reference materials.

McIntyre ABR, Alexander N, Grigorev K, Bezdan D, Sichtig H, Chiu CY, Mason CE. McIntyre ABR, et al. Nat Commun. 2019 Feb 4;10(1):579. doi: 10.1038/s41467-019-08289-9. Nat Commun. 2019. PMID: 30718479 Free PMC article.

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Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.

McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE. McIntyre ABR, et al. Genome Biol. 2017 Sep 21;18(1):182. doi: 10.1186/s13059-017-1299-7. Genome Biol. 2017. PMID: 28934964 Free PMC article.

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