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Year Number of Results
2013 1
2016 1
2017 1
2018 1
2019 3
2020 2
2021 5
2022 1
2023 6
2024 5

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Page 1
ColabFold: making protein folding accessible to all.
Mirdita M, Schütze K, Moriwaki Y, Heo L, Ovchinnikov S, Steinegger M. Mirdita M, et al. Nat Methods. 2022 Jun;19(6):679-682. doi: 10.1038/s41592-022-01488-1. Epub 2022 May 30. Nat Methods. 2022. PMID: 35637307 Free PMC article.
Clustering predicted structures at the scale of the known protein universe.
Barrio-Hernandez I, Yeo J, Jänes J, Mirdita M, Gilchrist CLM, Wein T, Varadi M, Velankar S, Beltrao P, Steinegger M. Barrio-Hernandez I, et al. Among authors: mirdita m. Nature. 2023 Oct;622(7983):637-645. doi: 10.1038/s41586-023-06510-w. Epub 2023 Sep 13. Nature. 2023. PMID: 37704730 Free PMC article.
Petascale Homology Search for Structure Prediction.
Lee S, Kim G, Karin EL, Mirdita M, Park S, Chikhi R, Babaian A, Kryshtafovych A, Steinegger M. Lee S, et al. Among authors: mirdita m. bioRxiv [Preprint]. 2023 Jul 11:2023.07.10.548308. doi: 10.1101/2023.07.10.548308. bioRxiv. 2023. PMID: 37503235 Free PMC article. Updated. Preprint.
Fast and accurate protein structure search with Foldseek.
van Kempen M, Kim SS, Tumescheit C, Mirdita M, Lee J, Gilchrist CLM, Söding J, Steinegger M. van Kempen M, et al. Among authors: mirdita m. Nat Biotechnol. 2024 Feb;42(2):243-246. doi: 10.1038/s41587-023-01773-0. Epub 2023 May 8. Nat Biotechnol. 2024. PMID: 37156916 Free PMC article.
Petabase-Scale Homology Search for Structure Prediction.
Lee S, Kim G, Karin EL, Mirdita M, Park S, Chikhi R, Babaian A, Kryshtafovych A, Steinegger M. Lee S, et al. Among authors: mirdita m. Cold Spring Harb Perspect Biol. 2024 Feb 5:a041465. doi: 10.1101/cshperspect.a041465. Online ahead of print. Cold Spring Harb Perspect Biol. 2024. PMID: 38316555
LambdaPP: Fast and accessible protein-specific phenotype predictions.
Olenyi T, Marquet C, Heinzinger M, Kröger B, Nikolova T, Bernhofer M, Sändig P, Schütze K, Littmann M, Mirdita M, Steinegger M, Dallago C, Rost B. Olenyi T, et al. Among authors: mirdita m. Protein Sci. 2023 Jan;32(1):e4524. doi: 10.1002/pro.4524. Protein Sci. 2023. PMID: 36454227 Free PMC article.
Fast and sensitive taxonomic assignment to metagenomic contigs.
Mirdita M, Steinegger M, Breitwieser F, Söding J, Levy Karin E. Mirdita M, et al. Bioinformatics. 2021 Sep 29;37(18):3029-3031. doi: 10.1093/bioinformatics/btab184. Bioinformatics. 2021. PMID: 33734313 Free PMC article.
AlphaFold Protein Structure Database in 2024: providing structure coverage for over 214 million protein sequences.
Varadi M, Bertoni D, Magana P, Paramval U, Pidruchna I, Radhakrishnan M, Tsenkov M, Nair S, Mirdita M, Yeo J, Kovalevskiy O, Tunyasuvunakool K, Laydon A, Žídek A, Tomlinson H, Hariharan D, Abrahamson J, Green T, Jumper J, Birney E, Steinegger M, Hassabis D, Velankar S. Varadi M, et al. Among authors: mirdita m. Nucleic Acids Res. 2024 Jan 5;52(D1):D368-D375. doi: 10.1093/nar/gkad1011. Nucleic Acids Res. 2024. PMID: 37933859 Free PMC article.
Protein Sequence Analysis Using the MPI Bioinformatics Toolkit.
Gabler F, Nam SZ, Till S, Mirdita M, Steinegger M, Söding J, Lupas AN, Alva V. Gabler F, et al. Among authors: mirdita m. Curr Protoc Bioinformatics. 2020 Dec;72(1):e108. doi: 10.1002/cpbi.108. Curr Protoc Bioinformatics. 2020. PMID: 33315308
24 results