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Individualized mating system estimation using genomic data.

Colicchio J, Monnahan PJ, Wessinger CA, Brown K, Kern JR, Kelly JK. Colicchio J, et al. Among authors: monnahan pj. Mol Ecol Resour. 2020 Jan;20(1):333-347. doi: 10.1111/1755-0998.13094. Epub 2019 Oct 12. Mol Ecol Resour. 2020. PMID: 31519042

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Genetic control of kernel compositional variation in a maize diversity panel.

Renk JS, Gilbert AM, Hattery TJ, O'Connor CH, Monnahan PJ, Anderson N, Waters AJ, Eickholt DP, Flint-Garcia SA, Yandeau-Nelson MD, Hirsch CN. Renk JS, et al. Among authors: monnahan pj. Plant Genome. 2021 Nov;14(3):e20115. doi: 10.1002/tpg2.20115. Epub 2021 Jul 1. Plant Genome. 2021. PMID: 34197039 Free article.

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Whole-genome variation of transposable element insertions in a maize diversity panel.

Qiu Y, O'Connor CH, Della Coletta R, Renk JS, Monnahan PJ, Noshay JM, Liang Z, Gilbert A, Anderson SN, McGaugh SE, Springer NM, Hirsch CN. Qiu Y, et al. Among authors: monnahan pj. G3 (Bethesda). 2021 Sep 27;11(10):jkab238. doi: 10.1093/g3journal/jkab238. G3 (Bethesda). 2021. PMID: 34568911 Free PMC article.

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Predicting evolutionary change at the DNA level in a natural Mimulus population.

Monnahan PJ, Colicchio J, Fishman L, Macdonald SJ, Kelly JK. Monnahan PJ, et al. PLoS Genet. 2021 Jan 13;17(1):e1008945. doi: 10.1371/journal.pgen.1008945. eCollection 2021 Jan. PLoS Genet. 2021. PMID: 33439857 Free PMC article.

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Using multiple reference genomes to identify and resolve annotation inconsistencies.

Monnahan PJ, Michno JM, O'Connor C, Brohammer AB, Springer NM, McGaugh SE, Hirsch CN. Monnahan PJ, et al. BMC Genomics. 2020 Apr 8;21(1):281. doi: 10.1186/s12864-020-6696-8. BMC Genomics. 2020. PMID: 32264824 Free PMC article.

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GOOGA: A platform to synthesize mapping experiments and identify genomic structural diversity.

Flagel LE, Blackman BK, Fishman L, Monnahan PJ, Sweigart A, Kelly JK. Flagel LE, et al. Among authors: monnahan pj. PLoS Comput Biol. 2019 Apr 15;15(4):e1006949. doi: 10.1371/journal.pcbi.1006949. eCollection 2019 Apr. PLoS Comput Biol. 2019. PMID: 30986215 Free PMC article.

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Extreme copy number variation at a tRNA ligase gene affecting phenology and fitness in yellow monkeyflowers.

Nelson TC, Monnahan PJ, McIntosh MK, Anderson K, MacArthur-Waltz E, Finseth FR, Kelly JK, Fishman L. Nelson TC, et al. Among authors: monnahan pj. Mol Ecol. 2019 Mar;28(6):1460-1475. doi: 10.1111/mec.14904. Epub 2018 Dec 10. Mol Ecol. 2019. PMID: 30346101 Free PMC article.

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Gene expression plasticity resulting from parental leaf damage in Mimulus guttatus.

Colicchio JM, Monnahan PJ, Kelly JK, Hileman LC. Colicchio JM, et al. Among authors: monnahan pj. New Phytol. 2015 Jan;205(2):894-906. doi: 10.1111/nph.13081. Epub 2014 Oct 8. New Phytol. 2015. PMID: 25297849 Free article.

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Epistasis Is a Major Determinant of the Additive Genetic Variance in Mimulus guttatus.

Monnahan PJ, Kelly JK. Monnahan PJ, et al. PLoS Genet. 2015 May 6;11(5):e1005201. doi: 10.1371/journal.pgen.1005201. eCollection 2015 May. PLoS Genet. 2015. PMID: 25946702 Free PMC article.

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A genomic selection component analysis characterizes migration-selection balance.

Monnahan PJ, Colicchio J, Kelly JK. Monnahan PJ, et al. Evolution. 2015 Jul;69(7):1713-27. doi: 10.1111/evo.12698. Epub 2015 Jul 14. Evolution. 2015. PMID: 26082096 Free PMC article.

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